mrc-ide / PhyDynView external linksLinks
PhyDyn: Epidemiological modelling in BEAST
☆21Dec 22, 2022Updated 3 years ago
Alternatives and similar repositories for PhyDyn
Users that are interested in PhyDyn are comparing it to the libraries listed below
Sorting:
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- TN93 fast distance calculator☆19Jul 16, 2025Updated 6 months ago
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- ☆18Jun 11, 2024Updated last year
- Main development repository for SpreadGL☆20Sep 30, 2024Updated last year
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Apr 28, 2023Updated 2 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆41Feb 6, 2026Updated last week
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Jan 23, 2026Updated 3 weeks ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 3 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- ☆11Feb 9, 2025Updated last year
- Prediction fitness of leaves on a genealogical tree☆12May 7, 2015Updated 10 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 2 months ago
- R We There Yet?☆32Mar 27, 2025Updated 10 months ago
- ☆12May 12, 2019Updated 6 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Mar 4, 2019Updated 6 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 7 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Jan 4, 2026Updated last month
- Disease outbreak reconstruction from epidemiological and genetic data☆35Dec 16, 2025Updated last month
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Dec 8, 2025Updated 2 months ago
- machine learning guided antigenic evolution prediction☆12Jun 19, 2023Updated 2 years ago
- Quality control for phylogenetic analyses☆13Jan 19, 2026Updated 3 weeks ago
- Daily analyses of genomic SARS-CoV-2 data☆14Nov 8, 2022Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 8 months ago
- ☆20Jan 30, 2026Updated 2 weeks ago
- ☆13Oct 30, 2024Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 7 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Oct 7, 2024Updated last year
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆19Jan 23, 2025Updated last year
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 10, 2025Updated 9 months ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 6 years ago