mrc-ide / PhyDynLinks
PhyDyn: Epidemiological modelling in BEAST
☆21Updated 2 years ago
Alternatives and similar repositories for PhyDyn
Users that are interested in PhyDyn are comparing it to the libraries listed below
Sorting:
- ☆11Updated 10 months ago
- Reconstruction of transmission trees using genomic data☆68Updated 2 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Phylogenetic inference using Stan☆23Updated 9 months ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- ☆18Updated 2 months ago
- Phylodynamic inference☆21Updated 5 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 6 months ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Updated 3 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated this week
- ☆11Updated 7 months ago
- Pathogen evolution, selection and immunity☆45Updated last year
- Epidemiological modeling framework for pathogen population genetics and evolution.☆18Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last week
- ☆19Updated 4 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 5 months ago
- R We There Yet?☆32Updated 8 months ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31Updated 7 months ago
- ☆19Updated last year
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated last week
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Updated 2 years ago
- R Data Exploration for Serratus☆15Updated 2 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21Updated 7 months ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆90Updated 2 months ago