Alternatives and similar repositories for PhyDyn

Users that are interested in PhyDyn are comparing it to the libraries listed below

• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆69Updated 2 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 3 months ago
• blab / global-migration
  Analysis of global migration patterns of seasonal influenza viruses
  ☆22Updated 6 years ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆28Updated last year
• emvolz-phylodynamics / mlesky
  ☆11Updated 10 months ago
• emvolz-phylodynamics / treestructure
  ☆18Updated 2 months ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆23Updated 9 months ago
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆21Updated 5 years ago
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆23Updated 3 years ago
• trvrb / sismid
  Pathogen evolution, selection and immunity
  ☆45Updated last year
• reconhub / outbreaker2
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆35Updated 2 weeks ago
• emvolz-phylodynamics / phydynR
  Coalescent simulation and likelihood for phylodynamic inference
  ☆14Updated 7 months ago
• abschneider / StrainHub
  Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
  ☆17Updated 3 years ago
• phylogeography / SpreaD3
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆16Updated 2 years ago
• emmanuelparadis / phylobench
  ☆11Updated 7 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆40Updated 2 weeks ago
• danlwarren / RWTY
  R We There Yet?
  ☆32Updated 9 months ago
• duchene / phylomad
  ☆19Updated last year
• serratus-bio / tantalus
  R Data Exploration for Serratus
  ☆15Updated 2 years ago
• Wytamma / beastiary
  Real time and remote MCMC trace monitoring with BEASTIARY.
  ☆21Updated 7 months ago
• phylogeography / SPREADv1
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
  ☆20Updated 6 years ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 3 weeks ago
• sdwfrost / influenza-dynamics-practical-h5n1
  Inferring spatiotemporal dynamics of H5N1 influenza from sequence data
  ☆10Updated 12 years ago
• tothuhien / lsd2
  A phylogeny dating method using least-squares algorithms and criteria
  ☆32Updated last year
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆48Updated 3 weeks ago
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 6 months ago
• mdkarcher / phylodyn
  ☆19Updated 4 years ago
• crsl4 / phylogenetics-class
  A course in the theory and practice of phylogenetic inference from DNA sequence data
  ☆31Updated 8 months ago
• meringlab / FlashWeave.jl
  Inference of microbial interaction networks from large-scale heterogeneous abundance data
  ☆90Updated 2 months ago