Alternatives and similar repositories for MoBPS

Users that are interested in MoBPS are comparing it to the libraries listed below

• gaynorr / AlphaSimR
  R package for breeding program simulations
  ☆55Updated 3 weeks ago
• deruncie / MegaLMM
  R package for fitting high-dimensional multivariate linear mixed effect models
  ☆38Updated 4 months ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆182Updated last week
• sanger-pathogens / pathogen-informatics-training
  ☆74Updated 4 years ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆209Updated this week
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆116Updated 10 months ago
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆111Updated 6 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆88Updated 4 years ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆120Updated last year
• uqrmaie1 / admixtools
  ☆83Updated 3 months ago
• Gregor-Mendel-Institute / MultLocMixMod
  An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
  ☆14Updated 7 years ago
• gdlc / BGLR-R
  ☆109Updated 2 months ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆170Updated 6 months ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated last week
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆117Updated 2 years ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆145Updated 10 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆262Updated 8 months ago
• whussain2 / Analysis-pipeline
  ☆35Updated 3 years ago
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆101Updated this week
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆143Updated this week
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆119Updated last month
• SegataLab / lefse
  ☆84Updated last year
• TickingClock1992 / RIdeogram
  ☆180Updated 5 years ago
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆117Updated last month
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆106Updated 3 months ago
• mfumagalli / ngsTools
  Programs to analyse NGS data for population genetics purposes
  ☆177Updated last year
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 8 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated 3 months ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆66Updated 2 months ago