Alternatives and similar repositories for MoBPS

Users that are interested in MoBPS are comparing it to the libraries listed below

• gaynorr / AlphaSimR
  R package for breeding program simulations
  ☆52Updated this week
• deruncie / MegaLMM
  R package for fitting high-dimensional multivariate linear mixed effect models
  ☆38Updated 2 months ago
• Gregor-Mendel-Institute / MultLocMixMod
  An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
  ☆14Updated 7 years ago
• uqrmaie1 / admixtools
  ☆83Updated 2 months ago
• nf-core / eager
  A fully reproducible and state-of-the-art ancient DNA analysis pipeline
  ☆176Updated this week
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 2 weeks ago
• gdlc / BGLR-R
  ☆109Updated last month
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated last month
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆112Updated 9 months ago
• jendelman / polyBreedR
  Using genome-wide markers for polyploid breeding
  ☆11Updated 7 months ago
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆60Updated 4 years ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 4 years ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆95Updated last year
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated 5 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 5 months ago
• TickingClock1992 / RIdeogram
  ☆179Updated 4 years ago
• zhouyunyan / PIGC
  The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
  ☆27Updated 3 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated 3 weeks ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆59Updated 3 months ago
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆111Updated 4 months ago
• biocore / gemelli
  Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…
  ☆85Updated 10 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 6 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆144Updated 9 months ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆82Updated 2 months ago
• whussain2 / Analysis-pipeline
  ☆35Updated 3 years ago
• Trinotate / Trinotate
  Trinotate source code
  ☆82Updated last year
• PF2-pasteur-fr / SARTools
  Statistical Analysis of RNA-Seq Tools
  ☆106Updated 4 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆88Updated 4 years ago