jiang18 / slemm
Stochastic-Lanczos-Expedited Mixed Models
☆10Updated 2 months ago
Alternatives and similar repositories for slemm:
Users that are interested in slemm are comparing it to the libraries listed below
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 4 months ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated last month
- QTL mapping in outcrossing species using CIM☆10Updated last year
- ☆9Updated 4 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- Scalable population structure inference☆18Updated 2 years ago
- ☆25Updated last week
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆14Updated 2 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 4 years ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Updated 5 months ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆13Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 4 months ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated last week
- Sweep Inference Framework (controlling for correlation)☆29Updated 9 months ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆14Updated 3 years ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆58Updated 5 months ago
- Manhattan++☆28Updated last year
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- Fitting latent factor mixed models☆13Updated 4 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Helpful handful of programs, completely open-source and free☆11Updated 4 years ago
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated last year
- Preprocessing sequencing data for allele-specific analysis☆11Updated last month
- A flexible R package for weighted principal component case control matching☆10Updated last year
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆10Updated 5 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Updated 6 years ago
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago