Alternatives and similar repositories for hibayes:

Users that are interested in hibayes are comparing it to the libraries listed below

• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆56Updated 3 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆82Updated 2 years ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆79Updated this week
• YinLiLin / KAML
  Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
  ☆41Updated 2 months ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 2 months ago
• rcc-uchicago / genetic-data-analysis-2
  RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
  ☆24Updated last year
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 3 weeks ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆120Updated last week
• xiaolei-lab / SIMER
  Data Simulation for Life Science and Breeding
  ☆28Updated this week
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆36Updated last month
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆38Updated last year
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 3 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆34Updated 2 months ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆44Updated last year
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated 8 months ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆44Updated 7 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated last week
• browning-lab / hap-ibd
  The hap-ibd program detects identity-by-descent segments in phased genotype data.
  ☆46Updated 8 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆34Updated last year
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆49Updated 6 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆75Updated 6 months ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆34Updated 10 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 3 months ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 5 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year