YuanmingZhang65 / IIIVmrMLMLinks
The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN interactions for quantitative traits.
☆34Updated this week
Alternatives and similar repositories for IIIVmrMLM
Users that are interested in IIIVmrMLM are comparing it to the libraries listed below
Sorting:
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- Build haplotye and generate figures☆18Updated last month
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆51Updated 4 months ago
- ☆22Updated 6 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- R package for binmap☆12Updated 2 years ago
- ☆19Updated 3 years ago
- ☆42Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- ☆29Updated 2 years ago
- ☆24Updated 8 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 9 months ago
- ☆36Updated 2 years ago
- A software package for local ancestry inference and haplotype phasing☆43Updated 2 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Updated 6 months ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- QTL mapping with binmap data☆18Updated 6 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆40Updated last year
- ☆21Updated last year
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago