WGLab / HadoopCNVView external linksLinks
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
☆20Apr 25, 2017Updated 8 years ago
Alternatives and similar repositories for HadoopCNV
Users that are interested in HadoopCNV are comparing it to the libraries listed below
Sorting:
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- ☆16Feb 5, 2026Updated last week
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 7 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- ☆12Jul 17, 2024Updated last year
- R-package: Calculation of haplotype blocks and libraries☆35Jul 22, 2025Updated 6 months ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 7 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- AncestralClust☆11Jul 9, 2025Updated 7 months ago
- This repository contains course materials from JAX-BD2K workshop.☆32May 14, 2019Updated 6 years ago
- a complete reference book for clusterProfiler and its sub-packages☆16Aug 12, 2021Updated 4 years ago
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- ☆15Nov 22, 2022Updated 3 years ago
- ☆20Mar 31, 2021Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 10 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- This GCI/VCI 1.0 platform has now been retired, and replaced with our new 2.0 platform:☆25Sep 16, 2022Updated 3 years ago
- ☆18May 19, 2022Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- ☆22May 14, 2024Updated last year
- ☆51Jun 25, 2024Updated last year
- Copy number vaiation detection from SNP arrays☆97May 19, 2024Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 2 months ago
- ☆18Jan 24, 2018Updated 8 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 5 years ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 7 years ago
- Toolkit for genome-wide analysis of tandem repeats☆59Nov 7, 2025Updated 3 months ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 6 years ago
- Identification of segmental duplications in the genome☆27Mar 1, 2022Updated 3 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 5 years ago