HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
☆20Apr 25, 2017Updated 9 years ago
Alternatives and similar repositories for HadoopCNV
Users that are interested in HadoopCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Sep 18, 2026Updated 3 weeks ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- R-package: Calculation of haplotype blocks and libraries☆36Jul 22, 2025Updated last year
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 8 years ago
- AncestralClust☆13Jul 9, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- ☆13Updated this week
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- This repository contains course materials from JAX-BD2K workshop.☆33May 14, 2019Updated 7 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Nov 5, 2020Updated 5 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- a complete reference book for clusterProfiler and its sub-packages☆16Aug 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 10 months ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- VCF file compressor reaching over 30-fold efficiency on massive genotype datasets, with processing speeds up to 100 MB/s and peak memory …☆19Oct 5, 2026Updated last week
- ☆23May 14, 2024Updated 2 years ago
- Specifications for PacBio® native file formats☆31Nov 19, 2024Updated last year
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 7 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆32Apr 20, 2020Updated 6 years ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 4 years ago
- ☆14Jan 26, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ULTRA Locates Tandemly Repetitive Areas☆40Aug 28, 2026Updated last month
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 6 years ago
- ☆52Jun 25, 2024Updated 2 years ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Aug 20, 2020Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 9 years ago
- Toolkit for genome-wide analysis of tandem repeats☆65May 27, 2026Updated 4 months ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- Documenting usage and experience with bioinformatic tools☆40Sep 11, 2015Updated 11 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 2 months ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆25Apr 21, 2021Updated 5 years ago
- ☆35Jan 11, 2025Updated last year
- NGS course☆34Mar 21, 2017Updated 9 years ago
- Identification of segmental duplications in the genome☆29Mar 1, 2022Updated 4 years ago
- ☆15Nov 22, 2022Updated 3 years ago