Rosemeis / fastmixtureLinks
Software for ancestry estimation in unrelated individuals
☆22Updated last week
Alternatives and similar repositories for fastmixture
Users that are interested in fastmixture are comparing it to the libraries listed below
Sorting:
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- ☆18Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆57Updated 6 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 8 years ago
- Genetic maps in autopolyploids☆31Updated last week
- Sampling and inference of genealogies with recombination☆50Updated 6 months ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- ☆13Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆26Updated 2 weeks ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 2 weeks ago
- ☆35Updated 5 years ago
- ☆32Updated this week
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago