Rosemeis / fastmixtureLinks
Software for ancestry estimation in unrelated individuals
☆23Updated last week
Alternatives and similar repositories for fastmixture
Users that are interested in fastmixture are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆45Updated last week
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- R-package: Calculation of haplotype blocks and libraries☆35Updated 6 months ago
- WinPCA. A package for windowed principal component analysis.☆45Updated last week
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 3 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆29Updated 2 weeks ago
- ☆13Updated 4 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- ☆18Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 11 months ago
- ☆33Updated last week
- ☆54Updated 7 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- ☆27Updated 11 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Sampling and inference of genealogies with recombination☆50Updated 7 months ago
- Genetic maps in autopolyploids☆31Updated 3 weeks ago