Software for ancestry estimation in unrelated individuals
☆24Jan 31, 2026Updated 2 months ago
Alternatives and similar repositories for fastmixture
Users that are interested in fastmixture are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- ☆15Dec 3, 2024Updated last year
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 3 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- ☆15Jan 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 9 months ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- Algorithm for rapid, phase-free detection of long identical by descent segments☆23Mar 13, 2026Updated 3 weeks ago
- ☆14May 30, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated last month
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Updated this week
- A simple tool to calculate metrics from a BAM file and filter references with uneven coverages☆22Jan 29, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆18Nov 6, 2025Updated 5 months ago
- ☆13May 13, 2024Updated last year
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆14Aug 6, 2024Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Mar 10, 2026Updated last month
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- Targeted genotyper for complex polymorphic genes☆38Apr 1, 2026Updated last week
- Tutorial on using popular tools for learning about population history☆54Jul 18, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- implicit pangenome graph☆98Updated this week
- R-package: Calculation of haplotype blocks and libraries☆35Jul 22, 2025Updated 8 months ago
- Repository containing lists of all published ancient metagenomic (and related) samples and libraries☆80Updated this week
- NGSNGS: Next generation simulator for next generation sequencing data☆58Nov 27, 2024Updated last year
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 2 months ago
- Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler☆10Nov 8, 2018Updated 7 years ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 5 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year