Rosemeis / fastmixture
Software for ancestry estimation in unrelated individuals
☆10Updated last week
Related projects ⓘ
Alternatives and complementary repositories for fastmixture
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last month
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- Tutorial about R package PopGenome☆40Updated 5 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆30Updated 7 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 2 months ago
- Assessing confidence in introgression among four populations☆26Updated 3 years ago
- Repository for speciation genomics website☆24Updated 4 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆39Updated 5 years ago
- ☆25Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆24Updated 8 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆13Updated last month
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆43Updated 2 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆31Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆54Updated 3 weeks ago
- feature-based deep learning for the identification of selective sweeps☆50Updated 2 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆33Updated last year
- Sex assignment through coverage☆17Updated 8 months ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- ☆17Updated 6 years ago
- ☆38Updated last year
- Scripts and resources for the haploblocks manuscript☆14Updated 4 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆17Updated 5 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆30Updated 7 months ago
- Presentations from the course☆36Updated last year
- A workflow for integrating ancient lineages into present-day phylogenies.☆24Updated 2 months ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago