winni2k / GLPhase
A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
☆10Updated 4 years ago
Alternatives and similar repositories for GLPhase:
Users that are interested in GLPhase are comparing it to the libraries listed below
- R-package: Calculation of haplotype blocks and libraries☆30Updated last month
- Evaluation of phasing performance☆22Updated 7 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated last year
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- ☆23Updated last year
- ☆23Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆10Updated last year
- ☆30Updated 5 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated 8 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆29Updated 7 months ago