winni2k / GLPhaseLinks
A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
☆10Updated 4 years ago
Alternatives and similar repositories for GLPhase
Users that are interested in GLPhase are comparing it to the libraries listed below
Sorting:
- Evaluation of phasing performance☆23Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Copy number variation detection using NGS data.☆15Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last month
- Population-wide Deletion Calling☆35Updated 4 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆33Updated last month
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Structural variant merging tool☆53Updated last year
- Structural variant caller☆55Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- ☆51Updated 6 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆30Updated 3 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month