winni2k / GLPhaseLinks
A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
☆10Updated 4 years ago
Alternatives and similar repositories for GLPhase
Users that are interested in GLPhase are comparing it to the libraries listed below
Sorting:
- Evaluation of phasing performance☆23Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- R-package: Calculation of haplotype blocks and libraries☆31Updated 4 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 7 months ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Copy number variation detection using NGS data.☆15Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated this week
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆14Updated last year
- Structural variant caller☆54Updated 3 years ago
- ☆51Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- ☆34Updated 5 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- ☆35Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago