Alternatives and similar repositories for GLPhase

Users that are interested in GLPhase are comparing it to the libraries listed below

• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆28Updated last year
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 5 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆35Updated 6 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• EarlhamInst / NanoOK
  Analysis tool for Nanopore sequencing data
  ☆34Updated 6 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• tplinderoth / ngsParalog
  Copy number variation detection using NGS data.
  ☆19Updated 2 years ago
• ridgelab / Kmer-SSR
  Fast, Accurate, and Complete SSR Detection in Genomic Sequences
  ☆11Updated 5 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆35Updated 6 months ago
• sestaton / tephra
  A tool for discovering transposable elements and describing patterns of genome evolution
  ☆31Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆39Updated 4 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆15Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆51Updated 6 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆30Updated last year
• hillerlab / CESAR2.0
  ☆28Updated 3 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 4 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 9 months ago
• dpryan79 / SE-MEI
  Tools for finding mobile element insertions from single-end datasets
  ☆24Updated 6 years ago
• naturalis / wgs2ncbi
  Toolkit for preparing genomes for submission to NCBI
  ☆29Updated 4 years ago
• jdaron / CLARI-TE
  ☆12Updated 11 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated last year
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆59Updated 4 months ago
• GATB / gatb-minia-pipeline
  GATB Minia assembly pipeline
  ☆31Updated 3 years ago