scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions
☆38Mar 30, 2026Updated 2 months ago
Alternatives and similar repositories for scTriangulate
Users that are interested in scTriangulate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Aug 9, 2022Updated 3 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆56Feb 18, 2026Updated 3 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆40Jun 7, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Apr 13, 2020Updated 6 years ago
- ☆13Sep 3, 2025Updated 9 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆10Apr 28, 2023Updated 3 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 8 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Mar 19, 2026Updated 2 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- ☆19Mar 31, 2023Updated 3 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated last month
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jun 2, 2026Updated last week
- Easy single cell analysis platform for enrichment☆226Apr 3, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- ☆65Sep 13, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated 11 months ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆13Sep 30, 2024Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆82Nov 13, 2025Updated 7 months ago
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 6 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆48Feb 25, 2024Updated 2 years ago
- ☆13Jul 1, 2021Updated 4 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆197Jan 30, 2026Updated 4 months ago
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆49May 14, 2025Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.