klarman-cell-observatory / covid19-autopsyLinks
☆11Updated 4 years ago
Alternatives and similar repositories for covid19-autopsy
Users that are interested in covid19-autopsy are comparing it to the libraries listed below
Sorting:
- single-cell Nucleosome Methylation Transcription☆13Updated 7 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- ☆18Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated last month
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 9 months ago
- ACTIONet single-cell analysis framework☆42Updated 11 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated last week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Paired-seq☆14Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Regulatory networks with Direct Information☆16Updated 5 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 7 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Updated 8 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆15Updated 2 years ago