jmbreda / Sanity
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
☆69Updated last year
Alternatives and similar repositories for Sanity:
Users that are interested in Sanity are comparing it to the libraries listed below
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Finding gene expression states in scRNA-seq data☆50Updated 10 months ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- ☆56Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 3 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 5 months ago
- Single Cell Analysis of Five'Ends☆47Updated 10 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆63Updated 6 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Latent Embedding Multivariate Regression☆85Updated 2 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆83Updated 7 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- ☆34Updated 8 months ago
- ☆53Updated 4 years ago
- Cell type pipes for R☆51Updated last year
- AnnData interoperability in R☆68Updated this week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- ☆67Updated 6 years ago
- ☆60Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆79Updated 6 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated 11 months ago
- ☆39Updated this week
- Geometry-preserving random sampling☆78Updated 3 months ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- scNMT-seq gastrulation☆42Updated last year
- Clone identification from single-cell data☆61Updated 2 years ago
- ☆47Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆66Updated 5 years ago