jmbreda / SanityLinks
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
☆77Updated 3 months ago
Alternatives and similar repositories for Sanity
Users that are interested in Sanity are comparing it to the libraries listed below
Sorting:
- Latent Embedding Multivariate Regression☆93Updated 8 months ago
- Finding gene expression states in scRNA-seq data☆51Updated last year
- Tools for single-cell data processing☆125Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated last year
- Geometry-preserving random sampling☆89Updated 9 months ago
- AnnData interoperability in R☆86Updated this week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- ☆41Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆58Updated 11 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 8 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆86Updated last month
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆63Updated last week
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Normalize CITEseq Data☆66Updated 3 months ago
- Doublet detection in single-cell RNA-seq data.☆92Updated 5 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Single Cell Cluster Evaluation☆95Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 4 months ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆90Updated last year