jmbreda / SanityLinks
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
☆78Updated 6 months ago
Alternatives and similar repositories for Sanity
Users that are interested in Sanity are comparing it to the libraries listed below
Sorting:
- Latent Embedding Multivariate Regression☆97Updated 11 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆74Updated this week
- Finding gene expression states in scRNA-seq data☆51Updated last year
- ☆59Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- Tools for single-cell data processing☆127Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Doublet detection in single-cell RNA-seq data.☆93Updated 9 months ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Metacell - Single-cell mRNA Analysis☆117Updated 9 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Geometry-preserving random sampling☆93Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- ☆69Updated 7 years ago
- AnnData interoperability in R☆122Updated this week
- Normalize CITEseq Data☆66Updated this week
- Cell type pipes for R☆52Updated last year
- ☆43Updated 5 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago