Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
☆81Jun 26, 2026Updated last week
Alternatives and similar repositories for Sanity
Users that are interested in Sanity are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- Finding gene expression states in scRNA-seq data☆52Mar 22, 2024Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 3 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated last week
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 5 months ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆118Jun 27, 2026Updated last week
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆45Mar 30, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 2 months ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 7 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- ☆62Jun 17, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆617Jun 26, 2025Updated last year
- RNA Velocity generalized through dynamical modeling☆506Feb 25, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆332Nov 1, 2022Updated 3 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- post-clustering differential expression test☆37May 28, 2019Updated 7 years ago
- Cell cycle inference in single-cell RNA-seq☆52Apr 25, 2023Updated 3 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆403Jun 16, 2026Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆661Jun 5, 2026Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆88Mar 19, 2026Updated 3 months ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- ☆13Oct 17, 2021Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆196Mar 9, 2024Updated 2 years ago
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago