wmacnair / SampleQCLinks
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
☆38Updated 2 years ago
Alternatives and similar repositories for SampleQC
Users that are interested in SampleQC are comparing it to the libraries listed below
Sorting:
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Cell type pipes for R☆52Updated last year
- Normalize CITEseq Data☆66Updated 6 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆55Updated 4 years ago
- Toolkit for Single-Cell Velocity☆59Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated last month
- An R package to analyze single-cell V(D)J data☆28Updated last year
- R package containing the Cerebro application.☆40Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated 3 weeks ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 3 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Various utility functions for Seurat single-cell analysis☆53Updated last week
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- ☆43Updated 4 years ago
- R package to visualize scRNA sequencing data.☆20Updated 3 years ago
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- R package for analysing single cell data☆58Updated 2 years ago