Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
☆41Nov 14, 2022Updated 3 years ago
Alternatives and similar repositories for SampleQC
Users that are interested in SampleQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated last year
- ☆16Mar 18, 2025Updated last year
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- Explore design matrices interactively with R/Shiny☆38Apr 28, 2026Updated 2 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆12Apr 19, 2023Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 2 months ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 5 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆34May 31, 2026Updated last month
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Updated this week
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jun 8, 2026Updated 3 weeks ago
- ☆10Apr 28, 2023Updated 3 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆330Nov 1, 2022Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated 8 months ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10May 31, 2022Updated 4 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 4 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- ☆97Apr 18, 2024Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- ☆85Dec 11, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆17May 22, 2025Updated last year
- Robust Integration of Single-Cell Cytometry Datasets☆35Apr 29, 2026Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- CiteFuse:☆28Feb 7, 2023Updated 3 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆113Aug 13, 2020Updated 5 years ago
- Single Cell multimodal data scripts for downloading datasets☆19May 20, 2026Updated last month
- ☆11Aug 21, 2024Updated last year