Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
☆42Nov 14, 2022Updated 3 years ago
Alternatives and similar repositories for SampleQC
Users that are interested in SampleQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 9 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- ☆16Mar 18, 2025Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆15Jun 12, 2025Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- Explore design matrices interactively with R/Shiny☆38Apr 28, 2026Updated 5 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 5 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 4 months ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- ☆20Jul 28, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 5 years ago
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 5 years ago
- ☆48Sep 22, 2026Updated 2 weeks ago
- ☆10Apr 28, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆344Nov 1, 2022Updated 3 years ago
- ☆10May 31, 2022Updated 4 years ago
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆16Nov 30, 2020Updated 5 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated last year
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆15Jul 1, 2026Updated 3 months ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- ☆97Apr 18, 2024Updated 2 years ago
- ☆84Dec 11, 2023Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆43Nov 18, 2021Updated 4 years ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- CiteFuse:☆29Feb 7, 2023Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 3 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆114Aug 13, 2020Updated 6 years ago
- Single Cell multimodal data scripts for downloading datasets☆20May 20, 2026Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆49Jul 20, 2022Updated 4 years ago