wmacnair / SampleQCLinks
Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
☆38Updated 3 years ago
Alternatives and similar repositories for SampleQC
Users that are interested in SampleQC are comparing it to the libraries listed below
Sorting:
- Cell type pipes for R☆52Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- Normalize CITEseq Data☆66Updated last month
- Single-cell analysis with non-negative matrix factorization☆45Updated 5 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated 3 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- ☆55Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated last week
- An R-based interface for loom files☆67Updated 5 years ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- R package for analysing single cell data☆59Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 3 weeks ago
- ☆43Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆28Updated 2 months ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆46Updated 2 months ago
- A database of useful gene signatures for single-cell analysis☆27Updated 7 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆39Updated last month
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated last month
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year