Alternatives and similar repositories for Tweedieverse

Users that are interested in Tweedieverse are comparing it to the libraries listed below

• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 4 months ago
• xiaolw95 / NetMoss
  ☆14Updated 3 years ago
• jokergoo / KeywordsEnrichment
  ☆31Updated last year
• csoneson / treeclimbR
  ☆20Updated last month
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated 2 years ago
• guokai8 / microbial
  Do microbiome analysis with dada2 and phyloseq object
  ☆14Updated last year
• gtonkinhill / TCGA_analysis
  ☆26Updated 2 years ago
• jtleek / sva-devel
  ☆29Updated last year
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆28Updated 5 months ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated last month
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 3 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 5 months ago
• cxli233 / ggpathway
  A tutorial for pathway visualization using tidyverse, igraph, and ggraph
  ☆60Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated this week
• waldronlab / HMP16SData
  16S rRNA Sequencing Data from the Human Microbiome Project
  ☆10Updated last month
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆24Updated last year
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• mcalgaro93 / sc2meta
  Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…
  ☆10Updated 5 years ago
• js2264 / tidyCoverage
  ☆22Updated last month
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆13Updated 2 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 2 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 2 months ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 5 months ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 8 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago