Fast Tandem Repeat Finder
☆18Aug 9, 2026Updated last month
Alternatives and similar repositories for FASTAN
Users that are interested in FASTAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFF toolkit☆17May 23, 2026Updated 3 months ago
- Pairwise whole genome aligner☆244Sep 4, 2026Updated 2 weeks ago
- Multithreaded read analysis☆25May 24, 2026Updated 3 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- ☆18Jan 29, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆24Nov 19, 2025Updated 10 months ago
- Variant Calling for the HPRC2☆17May 26, 2026Updated 3 months ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Updated this week
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- ☆11Mar 4, 2025Updated last year
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated last year
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆43Jun 3, 2025Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Aug 14, 2026Updated last month
- A battery of methylation tools for PacBio HiFi reads☆54Jul 15, 2026Updated 2 months ago
- ☆32Jun 18, 2026Updated 3 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 6 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- Automatically exported from code.google.com/p/prank-msa☆41Mar 19, 2026Updated 6 months ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Whole genome visualization and comparative genomics in R☆25Feb 18, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Find endogenous viral elements in genomes☆25Sep 24, 2025Updated 11 months ago
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated last year
- ☆85Mar 3, 2025Updated last year
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆20Aug 1, 2023Updated 3 years ago
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆21Apr 24, 2024Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆29Oct 1, 2020Updated 5 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆40Dec 30, 2025Updated 8 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 5 months ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago