Alternatives and similar repositories for iCAMP1

Users that are interested in iCAMP1 are comparing it to the libraries listed below

• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆30Updated 7 years ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆120Updated last year
• ChengGaoBerkeley / EPICON.Mycobiome
  ☆13Updated 4 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆12Updated last year
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆127Updated 6 months ago
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆50Updated 3 years ago
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆18Updated 9 months ago
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆47Updated 10 months ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆25Updated 5 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆174Updated 2 weeks ago
• qichao1984 / NCyc
  ☆50Updated 4 years ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆129Updated last year
• Linwei-Wu / Global-bacterial-diversity-in-WWTPs
  ☆23Updated 6 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆71Updated 2 years ago
• yuezhengfu / CNPS.cycle
  This is an R package for element cycle analysis using metagenomic data.
  ☆37Updated 3 months ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆32Updated last year
• rogotoh / PMiFish
  ☆12Updated last year
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆46Updated last week
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆34Updated last month
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆14Updated 6 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆159Updated last week
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆26Updated 6 years ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 5 years ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆19Updated last year
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆45Updated 2 months ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆106Updated 5 years ago
• songweizhi / Tax4Fun2_short_tutorial
  A short tutorial for Tax4Fun2
  ☆21Updated last year