Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
☆96Sep 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for iCAMP1
Users that are interested in iCAMP1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated last year
- ☆13Jun 1, 2021Updated 5 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆27Apr 22, 2020Updated 6 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 5 months ago
- Microbial ecological network visualization clustering☆156Nov 20, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Jun 13, 2022Updated 4 years ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆19Aug 7, 2026Updated last month
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Mar 25, 2026Updated 5 months ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆95Oct 9, 2025Updated 11 months ago
- Network construction, analysis, and comparison for microbial compositional data☆182Jul 7, 2026Updated 2 months ago
- Data and scripts for amplicon pipeline☆27Mar 10, 2019Updated 7 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆52May 29, 2026Updated 3 months ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆53Dec 9, 2021Updated 4 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆235Aug 12, 2026Updated last month
- ☆22Nov 13, 2019Updated 6 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 5 months ago
- ☆21Apr 1, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆20Mar 17, 2021Updated 5 years ago
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated last month
- An R package for downstream data analysis of microbiome omics data☆292Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utilities for community ecology analysis☆22Oct 2, 2020Updated 5 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 6 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- 历史文档备份(只包含2019年和2020年)☆205Jul 20, 2021Updated 5 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- rdacca.hp: an R package for hierarchical and variation partitioning in multiple regression and canonical analysis☆23Feb 22, 2025Updated last year
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package for Ecological Networks utility functions and metrics☆11Aug 3, 2026Updated last month
- Helper Functions for Interactive Tree Of Life (iTOL)☆185Nov 2, 2025Updated 10 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- 📦 R package to compute functional diversity indices efficiently☆45Aug 20, 2026Updated last month
- Microbial community analysis tools in R☆22Aug 3, 2022Updated 4 years ago
- Local version of the virus identification and analysis web server (tool set)☆120May 13, 2026Updated 4 months ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago