Alternatives and similar repositories for FEAST

Users that are interested in FEAST are comparing it to the libraries listed below

• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆135Updated last week
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆114Updated 2 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆139Updated 6 months ago
• SegataLab / lefse
  ☆84Updated last year
• danknights / sourcetracker
  ☆74Updated last year
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆157Updated 2 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆184Updated 3 months ago
• YongxinLiu / EasyMicrobiome
  ☆109Updated 6 months ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆124Updated last week
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆75Updated 4 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆170Updated 3 weeks ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆188Updated last month
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆48Updated 3 years ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆113Updated last week
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆167Updated 2 months ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆103Updated 5 years ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆11Updated 5 years ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆119Updated last year
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆118Updated last year
• fjossandon / Tax4Fun2
  ☆15Updated 2 years ago
• emblab-westlake / MbioAssy
  ☆14Updated 3 months ago
• scwatts / fastspar
  Rapid and scalable correlation estimation for compositional data
  ☆87Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 7 months ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆25Updated 6 years ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆171Updated 5 months ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆114Updated last month