taowenmicro / phyloseq_translateLinks
phyloseq R
☆12Updated 5 years ago
Alternatives and similar repositories for phyloseq_translate
Users that are interested in phyloseq_translate are comparing it to the libraries listed below
Sorting:
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- ☆49Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆48Updated 3 years ago
- ☆27Updated last year
- ☆75Updated last year
- ☆85Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆54Updated 3 months ago
- Rapid and scalable correlation estimation for compositional data☆87Updated last year
- ☆14Updated 6 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 7 months ago
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 6 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Microbial ecological network visualization clustering☆120Updated 3 months ago
- Horizontal gene transfer (HGT) identification pipeline☆59Updated 2 years ago
- ☆30Updated 3 weeks ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Data and scripts for amplicon pipeline☆25Updated 6 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Metagenome analysis pipeline☆98Updated 3 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆103Updated 5 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- ☆14Updated 10 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 8 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆31Updated 11 months ago
- ☆13Updated 4 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆38Updated last month
- MicrobiomeReview☆11Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year