taowenmicro / phyloseq_translate
phyloseq R
☆11Updated 5 years ago
Alternatives and similar repositories for phyloseq_translate:
Users that are interested in phyloseq_translate are comparing it to the libraries listed below
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- ☆48Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ☆26Updated last year
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆48Updated 3 years ago
- Microbial ecological network visualization clustering☆111Updated last month
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 6 months ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- ☆74Updated last year
- ☆12Updated 3 years ago
- ☆13Updated 3 years ago
- ☆14Updated 10 years ago
- Data and scripts for amplicon pipeline☆25Updated 6 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆44Updated 5 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆53Updated last month
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 5 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 9 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- ☆13Updated 5 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- Rapid and scalable correlation estimation for compositional data☆87Updated 11 months ago
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- ☆28Updated last year
- Integrated Network Analysis Pipeline☆15Updated 4 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆59Updated 4 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated 3 months ago
- Metatranscriptomics Tutorial☆62Updated last year