Alternatives and similar repositories for Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome

Users that are interested in Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome are comparing it to the libraries listed below

• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆50Updated 4 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆90Updated 2 months ago
• ChengGaoBerkeley / EPICON.Mycobiome
  ☆13Updated 4 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆133Updated 3 weeks ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆254Updated last week
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆192Updated 9 months ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆26Updated 6 years ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆136Updated last year
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆10Updated 7 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆47Updated 2 months ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆123Updated last year
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆35Updated 10 years ago
• Linwei-Wu / Global-bacterial-diversity-in-WWTPs
  ☆23Updated 6 years ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆30Updated 7 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆72Updated 2 years ago
• DaliangNing / NST
  Normalized Stochasticity Ratio in community assembly
  ☆28Updated last year
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆170Updated last month
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated 3 months ago
• yuezhengfu / CNPS.cycle
  This is an R package for element cycle analysis using metagenomic data.
  ☆40Updated 5 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆179Updated last month
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆13Updated last year
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆172Updated 8 months ago
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆18Updated 11 months ago
• songweizhi / Tax4Fun2_short_tutorial
  A short tutorial for Tax4Fun2
  ☆23Updated last year
• rogotoh / PMiFish
  ☆12Updated last year
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆19Updated 5 years ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆173Updated last year
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated last month
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 6 years ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆14Updated 6 years ago