shuojiao / Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiomeView on GitHub
☆22Nov 13, 2019Updated 6 years ago
Alternatives and similar repositories for Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
Users that are interested in Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jun 1, 2021Updated 5 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Utilities for community ecology analysis☆21Oct 2, 2020Updated 5 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆53Dec 9, 2021Updated 4 years ago
- ☆12Jun 24, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 历史文档备份(只包含2019年和2020年)☆206Jul 20, 2021Updated 5 years ago
- ☆126Oct 12, 2021Updated 4 years ago
- Analysis code for a manuscript on community similarity computation☆15Apr 3, 2019Updated 7 years ago
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 2 months ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 9 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Web content for Meren Lab☆12Jul 17, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Jun 13, 2022Updated 4 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆95Oct 1, 2025Updated 9 months ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- An R pakage to calculate diversity through Hill Numbers☆36Nov 11, 2025Updated 8 months ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Using R language in microbiome analysis☆359May 10, 2023Updated 3 years ago
- ☆24Mar 2, 2019Updated 7 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 3 years ago
- Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation☆14Updated this week
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- A simple plot library☆53Jul 23, 2017Updated 9 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆15Feb 4, 2026Updated 5 months ago
- ☆23Dec 11, 2024Updated last year
- 微生信生物☆24Mar 17, 2025Updated last year
- How to draw multilayer networks in R.☆14Oct 25, 2020Updated 5 years ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 8 years ago