shuojiao / Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiomeView on GitHub
☆21Nov 13, 2019Updated 6 years ago
Alternatives and similar repositories for Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
Users that are interested in Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome are comparing it to the libraries listed below
Sorting:
- ☆13Jun 1, 2021Updated 4 years ago
- Utilities for community ecology analysis☆19Oct 2, 2020Updated 5 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆51Dec 9, 2021Updated 4 years ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆18Aug 29, 2025Updated 6 months ago
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- Analysis code for a manuscript on community similarity computation☆14Apr 3, 2019Updated 6 years ago
- ☆125Oct 12, 2021Updated 4 years ago
- 历史文档备份（只包含2019年和2020年）☆206Jul 20, 2021Updated 4 years ago
- ☆23Mar 2, 2019Updated 7 years ago
- FUNGuild: parsing OTUs into functional guilds☆129Apr 26, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Using R language in microbiome analysis☆349May 10, 2023Updated 2 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆93Oct 1, 2025Updated 5 months ago
- ☆38Feb 24, 2020Updated 6 years ago
- An R pakage to calculate diversity through Hill Numbers☆36Nov 11, 2025Updated 3 months ago
- mapping files for MetaCyc pathway☆12Sep 14, 2019Updated 6 years ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Extended tools for correlation analysis and visualization.☆45Mar 19, 2020Updated 5 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Aug 22, 2025Updated 6 months ago
- R package for Ecological Networks utility functions and metrics☆10Dec 18, 2025Updated 2 months ago
- Web content for Meren Lab☆11Updated this week
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated last month
- This is the code repository for CLM-Microbe model.☆12Jul 30, 2025Updated 7 months ago
- ☆10Mar 14, 2017Updated 8 years ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- A mathematical model for Fibonacci Retracement and location entry and exit formulation using ML☆10Aug 2, 2022Updated 3 years ago
- ☆14Jun 24, 2019Updated 6 years ago
- A deep-learning program, called fast fluorescent identification network (FFI-Net), is designed to fast identify the fluorescent component…☆21Mar 30, 2021Updated 4 years ago
- Code repository for R Data Mining Blueprints, published by Packt☆10Jan 14, 2021Updated 5 years ago
- ☆13Feb 22, 2024Updated 2 years ago
- CANTRIP: A database of CANopy TRaIt Plasticity☆10Nov 4, 2016Updated 9 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆13Feb 6, 2026Updated last month
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago
- ☆18Dec 11, 2024Updated last year