shuojiao / Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiomeView on GitHub
☆21Nov 13, 2019Updated 6 years ago
Alternatives and similar repositories for Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
Users that are interested in Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jun 1, 2021Updated 4 years ago
- Utilities for community ecology analysis☆20Oct 2, 2020Updated 5 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆52Dec 9, 2021Updated 4 years ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆18Aug 29, 2025Updated 7 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- 历史文档备份(只包含2019年和2020年)☆206Jul 20, 2021Updated 4 years ago
- ☆125Oct 12, 2021Updated 4 years ago
- Analysis code for a manuscript on community similarity computation☆14Apr 3, 2019Updated 6 years ago
- ☆18Dec 11, 2024Updated last year
- Statistics and visualization for amplicon data☆73Apr 25, 2023Updated 2 years ago
- R package computes correlation for relative abundances☆13May 22, 2017Updated 8 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- FUNGuild: parsing OTUs into functional guilds☆129Apr 26, 2024Updated last year
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Web content for Meren Lab☆11Updated this week
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆14Mar 16, 2026Updated 2 weeks ago
- ☆25Jun 13, 2022Updated 3 years ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆93Oct 1, 2025Updated 5 months ago
- ☆23Mar 2, 2019Updated 7 years ago
- Threshold Indicator Taxa Analysis☆16Mar 3, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆79Jul 17, 2023Updated 2 years ago
- An R pakage to calculate diversity through Hill Numbers☆36Nov 11, 2025Updated 4 months ago
- Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation☆13Mar 12, 2026Updated 2 weeks ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- A simple plot library☆52Jul 23, 2017Updated 8 years ago
- Extended tools for correlation analysis and visualization.☆45Mar 19, 2020Updated 6 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Various functions for analysis of microbial community data☆47Oct 1, 2025Updated 5 months ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- 微生信生物☆24Mar 17, 2025Updated last year
- ☆20Dec 4, 2025Updated 3 months ago
- How to draw multilayer networks in R.☆14Oct 25, 2020Updated 5 years ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 7 years ago
- R package for microbiome biomarker discovery☆194Feb 19, 2025Updated last year