Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
☆62Apr 18, 2021Updated 5 years ago
Alternatives and similar repositories for MAG_Snakemake_wf
Users that are interested in MAG_Snakemake_wf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Feb 13, 2020Updated 6 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆29Jul 21, 2022Updated 3 years ago
- MGnify genome analysis pipeline☆110Updated this week
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆260Jul 27, 2024Updated last year
- A tool for removing redundant genomes from a set of assemblies☆80Sep 10, 2025Updated 7 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Feb 3, 2021Updated 5 years ago
- Interpretation and visualization of microbiome charts☆544Jul 22, 2025Updated 9 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆34Aug 16, 2022Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Apr 19, 2026Updated 2 weeks ago
- Supporting code for uncultivated gut virus manuscript☆80Jul 17, 2023Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆133Apr 22, 2026Updated last week
- bioBakery tools for meta'omic profiling☆313Jun 3, 2025Updated 11 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Feb 26, 2026Updated 2 months ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microbial ecological network visualization clustering☆148Nov 20, 2025Updated 5 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated last week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆23May 14, 2023Updated 2 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Curated Metagenomic Data of the Human Microbiome☆153Apr 18, 2026Updated 2 weeks ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated last year
- ☆46Jun 27, 2023Updated 2 years ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- ☆29Jan 16, 2024Updated 2 years ago