QuentinRougemont / EASYstrataLinks
genome annotation (RNAseq and TE) pipeline (draft)
☆12Updated 4 months ago
Alternatives and similar repositories for EASYstrata
Users that are interested in EASYstrata are comparing it to the libraries listed below
Sorting:
- Robust identification of orthologous Synteny with the Orthology Index☆36Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 11 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆29Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Multi-genome synteny block visualization tool☆52Updated 2 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- ☆21Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆33Updated 2 months ago
- ☆32Updated 11 months ago
- ☆29Updated 2 weeks ago
- ☆33Updated last year
- ☆45Updated 3 years ago
- ☆44Updated last year
- Automated pipeline for running CoalHMM☆13Updated 2 years ago
- ☆33Updated 9 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆34Updated 6 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Updated last year
- ☆44Updated 2 weeks ago