Alternatives and similar repositories for summary-gwas-imputation

Users that are interested in summary-gwas-imputation are comparing it to the libraries listed below

• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆42Updated 2 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 5 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated 3 weeks ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 9 months ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• hakyimlab / PredictDBPipeline
  ☆16Updated 5 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• clagiamba / moloc
  ☆37Updated 4 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated last year
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Updated 4 months ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated 2 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated last month
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 6 months ago
• cuelee / pleio
  ☆19Updated 4 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 3 months ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• borangao / MESuSiE
  ☆21Updated 4 months ago
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Updated 5 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year