Alternatives and similar repositories for lme4qtl:

Users that are interested in lme4qtl are comparing it to the libraries listed below

• OchoaLab / genio
  Statistical GENetics Input/Output Functions
  ☆18Updated 2 months ago
• covaruber / sommer
  ☆47Updated last week
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 5 months ago
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆59Updated 3 years ago
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 3 years ago
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆104Updated 4 years ago
• teunbrand / ggnomics
  A small project to add ggplot2 extensions
  ☆80Updated 3 years ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆104Updated 2 months ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆53Updated last month
• TiagoOlivoto / metan
  Package for multi-environment trial analysis
  ☆34Updated 6 months ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• YuLab-SMU / scatterpie
  scatter pie plot
  ☆62Updated 3 months ago
• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated 3 months ago
• Gregor-Mendel-Institute / mlmm
  An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
  ☆16Updated 7 years ago
• SISBID / Supervised-Learning
  ☆49Updated 8 months ago
• cran / sommer
   This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…
  ☆16Updated last month
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆20Updated 7 months ago
• SISBID / Unsupervised-Learning
  ☆50Updated 8 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆73Updated last year
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆91Updated last week
• Biometris / statgenGxE
  See https://biometris.github.io/statgenGxE for a full description
  ☆10Updated 3 weeks ago
• hhhh5 / ewastools
  A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)
  ☆25Updated this week
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated 2 weeks ago
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆145Updated last month
• deruncie / GridLMM
  GridLMM package
  ☆39Updated 3 weeks ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated last month
• fawda123 / ggord
  a take on ordination plots using ggplot2
  ☆64Updated 9 months ago
• Biometris / statgenGWAS
  See https://biometris.github.io/statgenGWAS for a full description
  ☆14Updated 3 weeks ago
• cheuerde / cpgen
  Parallel Genomic evaluations in R
  ☆17Updated 7 months ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year