Alternatives and similar repositories for PredictDB_Pipeline_GTEx_v7:

Users that are interested in PredictDB_Pipeline_GTEx_v7 are comparing it to the libraries listed below

• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• LieberInstitute / brainseq_phase2
  BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
  ☆10Updated last year
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• hakyimlab / PredictDBPipeline
  ☆15Updated 4 years ago
• hakyimlab / gtex-gwas-analysis
  ☆22Updated 3 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• bhattacharya-a-bt / isotwas
  ☆21Updated 3 months ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆16Updated last month
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 4 months ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• yanglab-emory / TIGAR
  ☆21Updated 3 weeks ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• Stahl-Lab-MSSM / coloc2
  Upgrade to coloc
  ☆13Updated 6 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆15Updated last year
• thewonlab / H-MAGMA
  ☆32Updated last year
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆15Updated 3 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆11Updated 8 months ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆20Updated 3 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 6 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆32Updated last month