Alternatives and similar repositories for cwas

Users that are interested in cwas are comparing it to the libraries listed below

• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated last year
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆13Updated 4 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• opain / Predicting-TWAS-features
  Tool for predicting TWAS features (e.g. gene expression) in a target sample
  ☆16Updated 7 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆31Updated last year
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 6 months ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆18Updated 10 months ago
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last week
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 3 years ago
• cuelee / pleio
  ☆19Updated 5 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆20Updated 9 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆16Updated 11 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆26Updated 10 months ago
• borangao / MESuSiE
  ☆21Updated 5 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 weeks ago
• immunogenomics / cov-ldsc
  ☆11Updated 3 years ago
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆25Updated last month
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• opain / Inferred-functional-risk-scoring
  R script for generating functionally informed genetic risk scores from TWAS
  ☆11Updated 2 years ago
• bogdanlab / fizi
  Leveraging functional information to improve GWAS summary statistic imputation
  ☆19Updated 4 years ago
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated last year
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆14Updated 3 years ago