scbaca / cwas
Workflow for performing cistrome-wide associations studies
☆10Updated 2 years ago
Alternatives and similar repositories for cwas:
Users that are interested in cwas are comparing it to the libraries listed below
- Create Regional Association Plots☆11Updated 5 months ago
- Integration of TWAS and Colocalization Analysis☆14Updated 2 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Software to infer latent pleiotropic components from GWAS summary data☆13Updated 3 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 9 months ago
- Estimate genetic correlation using predicted expression☆21Updated 6 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- ☆8Updated last year
- GWAS genetics Fine-mapping method☆21Updated 3 months ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆14Updated 6 months ago
- Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆20Updated this week
- ☆18Updated 10 months ago
- ☆18Updated 2 months ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆18Updated 2 years ago
- An R package for creating ggplot2 based miami plots.☆16Updated 10 months ago
- GENI plots to visualise results from genome-wide association studies☆26Updated 3 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆13Updated last month
- ☆19Updated last week
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- ☆14Updated 3 years ago
- ☆21Updated 2 months ago
- Code for implementing Mendelian randomization investigations☆15Updated 9 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆12Updated 2 years ago
- Fine-mapping method only using summary statistics☆18Updated 8 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated last year
- Fine-mapping with infinitesimal effects☆14Updated 10 months ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆13Updated 4 years ago
- ☆19Updated 4 months ago