FINNGEN / finemapping-pipeline
Statistical fine-mapping pipeline in FinnGen
☆26Updated last week
Related projects ⓘ
Alternatives and complementary repositories for finemapping-pipeline
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 2 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated 10 months ago
- Regional association plots☆25Updated 7 months ago
- ☆32Updated last year
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆32Updated 4 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated last week
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- ☆33Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Cross-population fine-mapping☆27Updated 2 weeks ago
- Software for estimating correlation of trait effect sizes across populations☆40Updated 2 years ago
- ☆21Updated 3 years ago
- ☆19Updated last year
- An R package for creating ggplot2 based miami plots.☆16Updated 8 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆40Updated 6 years ago
- Regional association plots☆25Updated 7 months ago
- Make LocusZoom-like plots with your own LD matrix.☆38Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- GWAS genetics Fine-mapping method☆18Updated last month
- Manhattan++☆26Updated 9 months ago
- ☆16Updated 3 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- ☆17Updated 8 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆31Updated last month
- ☆42Updated 3 weeks ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆17Updated 2 years ago