FINNGEN / finemapping-pipeline
Statistical fine-mapping pipeline in FinnGen
☆28Updated 2 months ago
Alternatives and similar repositories for finemapping-pipeline:
Users that are interested in finemapping-pipeline are comparing it to the libraries listed below
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 4 months ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 7 months ago
- ☆34Updated 3 years ago
- Colocalization analysis of genetic association signals☆50Updated last month
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Sequence kernel association test (SKAT)☆43Updated last year
- ☆46Updated 2 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 6 years ago
- ☆32Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆47Updated last month
- ☆27Updated 4 months ago
- Regional association plots☆25Updated 9 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated this week
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆18Updated 2 years ago
- Primo☆16Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- ☆15Updated 4 years ago
- PRS pipeline using PRS_CS☆12Updated last month
- Software for estimating correlation of trait effect sizes across populations☆42Updated 2 years ago
- ☆21Updated 3 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- ☆20Updated last year
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 4 years ago
- Manhattan++☆28Updated 11 months ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆28Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆29Updated last year
- Regional association plots☆25Updated 9 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆26Updated 8 months ago