FINNGEN / finemapping-pipelineView external linksLinks
Statistical fine-mapping pipeline in FinnGen
☆31Oct 3, 2025Updated 4 months ago
Alternatives and similar repositories for finemapping-pipeline
Users that are interested in finemapping-pipeline are comparing it to the libraries listed below
Sorting:
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Jun 17, 2025Updated 7 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 3 months ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 5 years ago
- Convert GWAS summary statistics to VCF☆48Mar 11, 2023Updated 2 years ago
- user-friendly pipeline for GWAS fine-mapping☆12Mar 9, 2025Updated 11 months ago
- Regional association plots☆26Apr 1, 2024Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Jun 15, 2021Updated 4 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 3 years ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated last year
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 2 weeks ago
- Make LocusZoom-like plots with your own LD matrix.☆49Jul 17, 2022Updated 3 years ago
- ☆21Nov 15, 2024Updated last year
- CoMorMent-Containers☆36Dec 6, 2025Updated 2 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 2 years ago
- GENI plots to visualise results from genome-wide association studies☆31Oct 14, 2024Updated last year
- ☆13Jun 15, 2022Updated 3 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆27Sep 2, 2021Updated 4 years ago
- Regional association plots☆24Apr 1, 2024Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Feb 11, 2023Updated 3 years ago
- Scripts for running a sibling GWAS☆16Mar 16, 2022Updated 3 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Jan 3, 2026Updated last month
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- Machine learning pipeline for meta-prediction of coronary artery disease☆17Apr 16, 2025Updated 9 months ago
- An R package for creating ggplot2 based miami plots.☆18Mar 7, 2025Updated 11 months ago
- Separating the direct effects of risk factors for atherosclerotic cardiovascular disease from those mediated by type 2 diabetes☆18Mar 12, 2023Updated 2 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Jun 28, 2021Updated 4 years ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Dec 25, 2023Updated 2 years ago
- Fine-mapping with infinitesimal effects☆20May 27, 2025Updated 8 months ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 4 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 5 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆53Mar 6, 2025Updated 11 months ago