Alternatives and similar repositories for vicar

Users that are interested in vicar are comparing it to the libraries listed below

• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated 3 months ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 10 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated 3 months ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆31Updated 3 weeks ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 7 years ago
• stephenslab / poisson.mash.alpha
  An R package for Poisson multivariate adaptive shrinkage.
  ☆11Updated last year
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• stephaniehicks / qsmooth
  Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…
  ☆52Updated 2 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 years ago
• Teichlab / GPfates
  ☆21Updated 8 years ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 8 years ago
• leekgroup / phenopredict
  Use gene expression to predict phenotype sample information
  ☆19Updated 7 years ago
• kieranrcampbell / ouija
  Descriptive probabilistic marker gene approach to single-cell pseudotime inference
  ☆29Updated 5 years ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated 6 months ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 6 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• Simon-Coetzee / StatePaintR
  ☆10Updated 7 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated this week
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 8 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 10 months ago
• cozygene / refactor
  ☆25Updated 6 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• willwerscheid / flashier
  A faster and angrier package for EBMF.
  ☆12Updated 9 months ago