dcgerard / vicarLinks
Various Ideas for Confounder Adjustment in Regression
☆24Updated 2 years ago
Alternatives and similar repositories for vicar
Users that are interested in vicar are comparing it to the libraries listed below
Sorting:
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 8 months ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 4 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- home of the bear's lair☆10Updated 8 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- ☆21Updated 8 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆49Updated 5 years ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated 8 months ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Examples using R and 1000 genomes data☆28Updated 4 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- ☆20Updated last month
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago