Alternatives and similar repositories for ggLocusZoom

Users that are interested in ggLocusZoom are comparing it to the libraries listed below

• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆20Updated last month
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆41Updated 2 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 months ago
• yanglab-emory / TIGAR
  ☆21Updated 2 weeks ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆50Updated 7 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 3 months ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 11 months ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated 4 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆45Updated 3 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 2 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated this week
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 10 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆17Updated 7 months ago