Alternatives and similar repositories for miamiplot

Users that are interested in miamiplot are comparing it to the libraries listed below

• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 4 months ago
• cuelee / pleio
  ☆19Updated 4 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆41Updated 4 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 3 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 3 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 5 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• jinghuazhao / INF
  SCALLOP-INF analysis
  ☆20Updated last month
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated 2 weeks ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• GP2code / GP2-Multiancestry-metaGWAS
  ☆12Updated 2 years ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆26Updated 8 months ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆26Updated last year
• RitchieLab / Gene-level-statistical-colocalization
  ☆15Updated 4 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Updated 3 months ago
• borangao / MESuSiE
  ☆21Updated 4 months ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆32Updated last year