fhormoz / caviarLinks
☆63Updated 4 years ago
Alternatives and similar repositories for caviar
Users that are interested in caviar are comparing it to the libraries listed below
Sorting:
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Colocalization analysis of genetic association signals☆53Updated 6 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Updated 8 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆89Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated 3 months ago
- ☆40Updated 7 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆44Updated last year
- Software for estimating correlation of trait effect sizes across populations☆53Updated 7 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated 3 weeks ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 3 weeks ago
- Manhattan++☆28Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 6 months ago
- An accurate and efficient HLA imputation method.☆27Updated 2 years ago
- ☆16Updated 5 years ago
- Cross-population fine-mapping☆41Updated last year
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Updated last year
- methods for functional summary-based imputation☆91Updated 3 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Sequence kernel association test (SKAT)☆54Updated 4 months ago
- Quality control steps for GWAS☆26Updated 2 years ago
- Make LocusZoom-like plots with your own LD matrix.☆48Updated 3 years ago
- ☆27Updated 5 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Updated 5 years ago
- A complete tool set for molecular QTL discovery and analysis☆60Updated last year
- Read PLINK BED/BIM/FAM files into R☆44Updated 4 years ago