R package for fast maximum-likelihood estimation of mixture proportions using SQP.
☆11Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for mixsqp
Users that are interested in mixsqp are comparing it to the libraries listed below
Sorting:
- A faster and angrier package for EBMF.☆15Dec 10, 2025Updated 2 months ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 8 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- A new model and algorithm for multivariate Bayesian variable selection regression.☆26Feb 3, 2026Updated last month
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- R package for Empirical Bayes Factor Analysis.☆52Dec 4, 2024Updated last year
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.☆14Sep 16, 2020Updated 5 years ago
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆86Feb 16, 2026Updated 2 weeks ago
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated 10 months ago
- An R package for multivariate adaptive shrinkage.☆93Nov 7, 2024Updated last year
- A R package for Grade of Membership model and Visualization of counts data:☆33Jan 15, 2021Updated 5 years ago
- Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…☆16Jan 20, 2025Updated last year
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 3 years ago
- R package for fitting high-dimensional multivariate linear mixed effect models☆37Oct 20, 2025Updated 4 months ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year
- Website☆16Aug 30, 2025Updated 6 months ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆27Feb 4, 2017Updated 9 years ago
- R package for "sum of single effects" regression.☆245Updated this week
- Effective Computing—Resources for Computational Biologists☆27Apr 17, 2020Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆75Feb 14, 2026Updated 2 weeks ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- Code for Gaussian Score Matching Variational Inference☆35Feb 23, 2025Updated last year
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 4 months ago
- Large-scale Bayesian variable selection for R and MATLAB.☆41Mar 22, 2023Updated 2 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last week
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Repository for my machine learning students during the Spring 2022 semester☆24Sep 1, 2023Updated 2 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Jul 19, 2024Updated last year
- GridLMM package☆39Oct 16, 2025Updated 4 months ago
- This project uses Raspberry Pi to create an offline WiFi hotspot and chat room, allowing the general public to connect to the Meshtastic …☆27Feb 5, 2026Updated last month
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆13Updated this week