stephenslab / mvsusieR
A new model and algorithm for multivariate Bayesian variable selection regression.
☆21Updated 4 months ago
Related projects: ⓘ
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆27Updated 3 months ago
- Generalized linear Mixed Model Association Tests☆36Updated 10 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆39Updated 6 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆43Updated last year
- Code and simulations using interaction-LD score regression☆11Updated 2 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆23Updated 3 months ago
- Total and allele specific read based cis-QTL, fine-mapping, and prediction☆9Updated 3 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆17Updated 9 months ago
- Statistical fine-mapping pipeline in FinnGen☆24Updated last week
- Older repo for MRLocus. See new website for software usage guide:☆15Updated last year
- Variational Inference of Polygenic Risk Scores☆19Updated 3 months ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- package for the causal TWAS project☆32Updated this week
- ☆18Updated 2 years ago
- ☆20Updated 4 months ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 2 weeks ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Mediated Expression Score Regression (MESC)☆26Updated 2 years ago
- Colocalisation pipeline for Open Targets Genetics☆16Updated 2 years ago
- ☆32Updated last year
- QTL Discovery using Annotations☆23Updated last year
- ☆11Updated last year
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆14Updated this week
- LASSO for GWAS with summary statistics☆71Updated 3 years ago
- ☆19Updated last year
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆26Updated last year
- ☆31Updated 3 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated 6 months ago
- A collection of various utilities for GWAS summary statistics☆26Updated 4 months ago
- Non-parametric, asymptotic P-value computation for multivariate linear models☆13Updated 11 months ago