R package for Empirical Bayes Factor Analysis.
☆52Dec 4, 2024Updated last year
Alternatives and similar repositories for flashr
Users that are interested in flashr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A faster and angrier package for EBMF.☆16Dec 10, 2025Updated 4 months ago
- An R package for multivariate adaptive shrinkage.☆97Nov 7, 2024Updated last year
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago
- R package for fast maximum-likelihood estimation of mixture proportions using SQP.☆11Dec 21, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 9 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- R package for adaptive correlation and covariance matrix shrinkage.☆23Jan 23, 2019Updated 7 years ago
- An R package for adaptive shrinkage☆88Jul 24, 2025Updated 9 months ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- Effective Computing—Resources for Computational Biologists☆27Apr 17, 2020Updated 6 years ago
- RSS: Regression with Summary Statistics☆51Sep 16, 2024Updated last year
- R package for "sum of single effects" regression.☆256Updated this week
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 10 months ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Dynamic statistical comparisons in R☆17Jun 29, 2018Updated 7 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Density estimation using Gaussian mixtures in the presence of noisy, heterogeneous and incomplete data☆84Mar 30, 2026Updated last month
- Primitive interface to Google Documents from R☆28Nov 19, 2023Updated 2 years ago
- Library and command line scripts for fitting heteroskedastic linear mixed models to genetic data. Can be used to perform GWAS for genetic…☆19Sep 13, 2018Updated 7 years ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated last year
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- ☆32Dec 3, 2021Updated 4 years ago
- ☆29Feb 1, 2023Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆30Oct 15, 2020Updated 5 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated last month
- causal TWAS (cTWAS)☆49Mar 18, 2026Updated last month
- ☆19Apr 14, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GridLMM package☆39Oct 16, 2025Updated 6 months ago
- ☆10Jan 20, 2023Updated 3 years ago
- ☆14Nov 29, 2025Updated 5 months ago
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Large-scale Bayesian variable selection for R and MATLAB.☆41Mar 22, 2023Updated 3 years ago
- ☆28Jul 18, 2024Updated last year
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆87Apr 21, 2026Updated last week