Alternatives and similar repositories for flashr

Users that are interested in flashr are comparing it to the libraries listed below

• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated 11 months ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆85Updated 5 months ago
• jchiquet / aricode
  R package for computation of (adjusted) rand-index and other such scores
  ☆27Updated last month
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• HenrikBengtsson / git-bioc
  LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync
  ☆10Updated 9 years ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 5 years ago
• SISBID / Unsupervised-Learning
  ☆52Updated 5 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• kkdey / CorShrink
  R package for adaptive correlation and covariance matrix shrinkage.
  ☆23Updated 6 years ago
• deruncie / GridLMM
  GridLMM package
  ☆39Updated 3 months ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated 2 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated last year
• StoreyLab / biobroom
  Tidy up computational biology objects
  ☆50Updated 6 years ago
• nicolaroberts / hdp
  R pkg for Hierarchical Dirichlet Process
  ☆80Updated 2 years ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 9 months ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆82Updated last year
• bwlewis / 1000_genomes_examples
  Examples using R and 1000 genomes data
  ☆29Updated 4 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆91Updated last year
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated 2 months ago
• StoreyLab / lfa
  logistic factor analysis
  ☆16Updated 9 months ago
• mtmorgan / TENxGenomics
  Interface to 10x Genomics' 1.3 m single cell data set
  ☆18Updated 7 years ago
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• willtownes / glmpca
  ☆96Updated last year
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆39Updated 6 months ago
• Bioconductor / BiocStyle
  Issues and pull requests for BiocStyle should go here.
  ☆14Updated 2 months ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆54Updated 9 months ago
• QuantGen / BEDMatrix
  A matrix-like wrapper around PLINK .bed files
  ☆19Updated last year
• WandeRum / multiROC
  Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
  ☆34Updated 4 years ago