☆229Feb 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for phytools
Users that are interested in phytools are comparing it to the libraries listed below
Sorting:
- Phylogenetic analysis in R☆213Mar 6, 2026Updated 2 weeks ago
- Visualization and annotation of phylogenetic trees☆922Mar 9, 2026Updated last week
- Analysis of Phylogenetics and Evolution☆73Feb 18, 2026Updated last month
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆457Updated this week
- adegenet: a R package for the multivariate analysis of genetic markers☆200Feb 7, 2025Updated last year
- babette is an R package to work with BEAST2☆46Mar 13, 2026Updated last week
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆21Aug 11, 2025Updated 7 months ago
- ☆42Apr 2, 2024Updated last year
- Analysis of global migration patterns of seasonal influenza viruses☆22Jul 24, 2019Updated 6 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆14Mar 9, 2026Updated last week
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Jan 17, 2025Updated last year
- ☆18Updated this week
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 6 months ago
- R package for cladistic disparity☆13Feb 5, 2026Updated last month
- ☆14Updated this week
- A book for teaching people how to do comparative methods in R☆22Jul 28, 2023Updated 2 years ago
- R We There Yet?☆32Mar 27, 2025Updated 11 months ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 8 months ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆79Mar 15, 2026Updated last week
- DPPDIV☆12Apr 10, 2020Updated 5 years ago
- ☆36Mar 5, 2026Updated 2 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆250Updated this week
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 3 years ago
- An R Package to build and simulate coalescent models☆20Updated this week
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆72Mar 14, 2026Updated last week
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆121May 21, 2024Updated last year
- Automatically exported from code.google.com/p/figtree☆460Updated this week
- Efficient phylogenomic software by maximum likelihood☆204Nov 4, 2021Updated 4 years ago
- rtrees: an R package to assemble phylogenetic trees from mega-trees☆36Mar 10, 2026Updated last week
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Updated this week
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated last month
- Phylogenetic orthology inference for comparative genomics☆839Jul 15, 2025Updated 8 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Jan 30, 2024Updated 2 years ago