liamrevell / phytools
☆217Updated last week
Alternatives and similar repositories for phytools:
Users that are interested in phytools are comparing it to the libraries listed below
- Phylogenetic analysis in R☆206Updated this week
- adegenet: a R package for the multivariate analysis of genetic markers☆175Updated 3 months ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆137Updated 10 months ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆99Updated 2 months ago
- Network construction, analysis, and comparison for microbial compositional data☆158Updated last month
- Pairwise multilevel comparison using adonis☆72Updated last year
- R package for microbiome biomarker discovery☆171Updated last year
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆146Updated last year
- Genomic Data Retrieval with R☆217Updated last month
- An R package for data analysis in microbial community ecology☆216Updated last week
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆203Updated last year
- Import qiime2 artifacts to R☆161Updated last month
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆89Updated 2 months ago
- Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package☆106Updated last week
- Examples of application of comparative methods in R☆58Updated 2 years ago
- diversity estimation under ecological networks☆83Updated last year
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- Species richness with high diversity☆68Updated last year
- Analysis of Phylogenetics and Evolution☆58Updated last month
- ☆80Updated 9 months ago
- microbiome R package☆289Updated last month
- A primer for computational tools to analyze genetics of populations in R☆86Updated 3 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆104Updated 4 months ago
- Helper R scripts for multiple PERMANOVA tests, AICc script for PERMANOVA, etc.☆10Updated 10 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆112Updated last week
- a complete reference book for treeio, tidytree and ggtree packages☆103Updated 2 years ago
- Miscellaneous functions for metagenomic analysis.☆47Updated 6 months ago
- A dynamic database of fungal trait measurements☆72Updated 4 years ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆44Updated 3 years ago
- Tools to work with variant call format files☆251Updated 3 weeks ago