Browser-based utility for phylogenetic tree visualisation.
☆40Feb 4, 2026Updated 2 months ago
Alternatives and similar repositories for icytree
Users that are interested in icytree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Mar 22, 2026Updated 3 weeks ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 6 months ago
- Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time…☆20Jan 23, 2025Updated last year
- Phylogenetic tree viewer based on D3.js☆61Aug 16, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 11 months ago
- Port of Python's pdfminer to Lisp☆15Jan 30, 2016Updated 10 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- python-nexus - Generic nexus (.nex, .trees) reader/writer for python☆11Feb 20, 2025Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆26Jun 16, 2021Updated 4 years ago
- Austronesian Comparative Dictionary☆18Jan 7, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated 10 months ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Uncompromisingly Flexible Phylogenetic Trees in Javascript☆23Apr 8, 2026Updated last week
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.☆30Apr 10, 2023Updated 3 years ago
- ☆13Jan 31, 2020Updated 6 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BEAST analysis backing effective linguistics☆12May 4, 2025Updated 11 months ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆80Apr 11, 2026Updated last week
- High-performance analytical database for sequence alignment data☆18Updated this week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Mar 31, 2026Updated 2 weeks ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 7 months ago
- A Cursor type for use with rust-postgres☆14May 31, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Dec 27, 2022Updated 3 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- Influenza data pipeline to automate genotyping assignment☆41Mar 19, 2026Updated 3 weeks ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- Tools for interfacing between cryoSPARC and Relion☆21Feb 8, 2024Updated 2 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago
- A textbook for phylogenetic comparative methods.☆43Sep 20, 2019Updated 6 years ago