A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
☆115Oct 2, 2025Updated 8 months ago
Alternatives and similar repositories for tcoffee
Users that are interested in tcoffee are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41May 29, 2026Updated last month
- A fast multiple sequence alignment program.☆160Jun 20, 2026Updated last week
- A rapid and low-memory multiple-genome aligner for closely related genomes☆26Sep 3, 2025Updated 9 months ago
- Graphical Representation of Ancestral Sequence Predictions☆14Mar 6, 2023Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Apr 30, 2026Updated last month
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆33May 2, 2025Updated last year
- Python package for processing deep learning models☆16Dec 12, 2025Updated 6 months ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆284Apr 20, 2026Updated 2 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- ☆10Feb 28, 2018Updated 8 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆40Apr 17, 2026Updated 2 months ago
- Mummer alignment tool☆563Feb 4, 2025Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Mar 8, 2023Updated 3 years ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆21May 10, 2023Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆42Sep 16, 2025Updated 9 months ago
- Banded Striped DNA Sequence Alignment☆53May 9, 2023Updated 3 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆199May 28, 2026Updated last month
- Tools for manipulating biological data, particularly multiple sequence alignments☆161Updated this week
- ☆17Feb 16, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 10 months ago
- Remote protein homology detection suite.☆622Aug 12, 2025Updated 10 months ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆236May 20, 2026Updated last month
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 8 years ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 5 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆73Oct 16, 2023Updated 2 years ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated 2 months ago
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Mar 20, 2026Updated 3 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆95Aug 11, 2025Updated 10 months ago