a broadly applicable tool for automated gene identification and retrieval
☆41Apr 13, 2026Updated this week
Alternatives and similar repositories for orthofisher
Users that are interested in orthofisher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last month
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆84Updated this week
- ☆22Sep 12, 2019Updated 6 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆41Mar 1, 2026Updated last month
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Improved Inference of Ortholog Groups using Hidden Markov Models☆39Mar 29, 2026Updated 3 weeks ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆89Updated this week
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- ☆11Sep 4, 2024Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆95Mar 26, 2026Updated 3 weeks ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 8 months ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 6 months ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆237Mar 27, 2026Updated 3 weeks ago
- ☆11Mar 4, 2025Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated 2 months ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- IQ-TREE version 3: software for phylogenetics☆123Apr 2, 2026Updated 2 weeks ago
- ☆17Feb 16, 2026Updated 2 months ago
- A dotplot generator for large chromosomes☆42Oct 3, 2023Updated 2 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆30May 13, 2025Updated 11 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- ☆13Sep 11, 2025Updated 7 months ago
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 4 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 3 months ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago