a broadly applicable tool for automated gene identification and retrieval
☆42Jun 16, 2026Updated 4 months ago
Alternatives and similar repositories for orthofisher
Users that are interested in orthofisher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- Inference of Ortholog Groups using Hidden Markov Models☆39Oct 29, 2026Updated last week
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 5 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆93Oct 23, 2026Updated 2 weeks ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A shiny R application to prune phylogenies in our database or user input and obtain a subtree☆12Nov 18, 2021Updated 4 years ago
- ☆22Sep 12, 2019Updated 7 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆96Oct 26, 2026Updated last week
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Oct 31, 2026Updated last week
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 7 years ago
- Tool for drawing gene structures from genome annotation files.☆23Jun 20, 2026Updated 4 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins☆13Nov 28, 2022Updated 3 years ago
- ☆13Oct 11, 2026Updated 3 weeks ago
- ☆18Feb 16, 2026Updated 8 months ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆140Updated this week
- ☆10Sep 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆83May 2, 2026Updated 6 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆148Apr 6, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- ML approach to discerning "best" Open Reading Frames (ORFs) from "noisy" transcriptomic data. Intended for identification of lineage-spec…☆10Aug 20, 2024Updated 2 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago
- Linear-time de novo Long Read Assembler☆43Oct 28, 2026Updated last week
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆261Jun 25, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FastOMA is a scalable software package to infer orthology relationship.☆104Updated this week
- ☆278Jun 26, 2025Updated last year
- ☆11Mar 4, 2025Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆35Updated this week
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year