Alternatives and similar repositories for mlesky:

Users that are interested in mlesky are comparing it to the libraries listed below

• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 4 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 10 months ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 8 months ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆25Updated 6 months ago
• grubaughlab / DENV_pipeline
  ☆15Updated last week
• tothuhien / Rlsd2
  An R-wrapper for lsd2
  ☆9Updated last year
• duchene / phylomad
  ☆19Updated 7 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆61Updated last year
• jsigao / prioritree
  ☆9Updated 2 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆30Updated 2 years ago
• emvolz-phylodynamics / phydynR
  Coalescent simulation and likelihood for phylodynamic inference
  ☆13Updated last month
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated 8 months ago
• mdkarcher / phylodyn
  ☆17Updated 3 years ago
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆22Updated 2 years ago
• CDCgov / aquascope
  ☆20Updated last week
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last year
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated 7 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆29Updated this week
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 6 years ago
• dhelekal / CaveDive
  ☆17Updated 7 months ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆23Updated last year
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated this week
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆32Updated last month
• phylogeography / SpreaD3
  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
  ☆13Updated last year
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆12Updated 3 months ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated last year
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• laduplessis / skylinetools
  Utilities and distributions for (birth-death) skyline models.
  ☆10Updated 5 years ago
• SWittouck / tidyamplicons
  Functions to manipulate and visualize microbial community data
  ☆11Updated last year