Alternatives and similar repositories for mlesky

Users that are interested in mlesky are comparing it to the libraries listed below

• emvolz-phylodynamics / treestructure
  ☆18Updated last month
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated 3 weeks ago
• theosanderson / chronumental
  Estimating time trees from very large phylogenies
  ☆27Updated last year
• emvolz-phylodynamics / phydynR
  Coalescent simulation and likelihood for phylodynamic inference
  ☆14Updated 3 months ago
• duchene / phylomad
  ☆19Updated last year
• mdkarcher / phylodyn
  ☆18Updated 3 years ago
• mrc-ide / skygrowth
  Phylodynamic inference
  ☆18Updated 5 years ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆23Updated 5 months ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated last year
• grubaughlab / DENV_pipeline
  ☆17Updated 4 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last month
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆22Updated 2 years ago
• plemey / SARSCoV2origins
  A repo with supplementary material for a manuscript on the origin of SARS-CoV-2 origins
  ☆11Updated 5 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• tgvaughan / bacter
  Bacterial phylogenetics in BEAST 2.
  ☆17Updated 2 years ago
• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 7 years ago
• nmatzke / BEASTmasteR
  R code for writing Beast2 XML (especially morphology/tip-dating)
  ☆11Updated last year
• noemielefrancq / Phylowave_Learning-fitness-dynamics-pathogens-in-phylogenies
  Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"
  ☆20Updated 4 months ago
• CDCgov / aquascope
  ☆20Updated 4 months ago
• roblanf / BenchmarkAlignments
  Benchmark empirical datasets for phylogenetic method development
  ☆19Updated last year
• dhelekal / CaveDive
  ☆17Updated last year
• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated last year
• gtonkinhill / rhierbaps
  rhierbaps: R implementation of hierBAPS
  ☆35Updated 4 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 5 months ago
• tothuhien / lsd2
  A phylogeny dating method using least-squares algorithms and criteria
  ☆28Updated 10 months ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 5 months ago
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆35Updated last week
• phytest-devs / phytest
  Quality control for phylogenetic analyses
  ☆13Updated 2 weeks ago
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• christiaanjs / treeflow
  ☆13Updated 10 months ago