☆38Apr 14, 2022Updated 3 years ago
Alternatives and similar repositories for RedDog
Users that are interested in RedDog are comparing it to the libraries listed below
Sorting:
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- ☆59Mar 13, 2026Updated last week
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated last month
- "Reads to report" for public health and clinical microbiology☆143Dec 9, 2025Updated 3 months ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 5 years ago
- IS mapping software☆57Dec 3, 2021Updated 4 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆131Feb 26, 2024Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- Rapid haploid variant calling and core genome alignment☆575Dec 12, 2025Updated 3 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆29Jul 18, 2025Updated 8 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ☆136Updated this week
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated last month
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations