katholt / RedDogLinks
☆37Updated 3 years ago
Alternatives and similar repositories for RedDog
Users that are interested in RedDog are comparing it to the libraries listed below
Sorting:
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- ☆53Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 6 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- all methods related to Enterobase☆43Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆56Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- SeqSero2☆38Updated 3 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆59Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago