☆38Apr 14, 2022Updated 4 years ago
Alternatives and similar repositories for RedDog
Users that are interested in RedDog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- ☆61May 11, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 5 months ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 6 years ago
- IS mapping software☆58Dec 3, 2021Updated 4 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- Rapid haploid variant calling and core genome alignment☆585Dec 12, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated 10 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 3 months ago
- ☆138May 11, 2026Updated last week
- Split Kmer Analysis☆67May 26, 2022Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 9 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- BSR-Based Allele Calling Algorithm☆149May 15, 2026Updated last week
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 5 years ago
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆219Aug 27, 2025Updated 8 months ago
- Pan-genome wide association studies☆218May 29, 2024Updated last year
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 6 months ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- ☆68Jul 8, 2016Updated 9 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 22, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆179Apr 22, 2026Updated 3 weeks ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆53May 25, 2022Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆41Oct 23, 2024Updated last year
- A collection of command-line tools I wrote to make various repetitive tasks more convenient☆16Updated this week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago