☆38Apr 14, 2022Updated 4 years ago
Alternatives and similar repositories for RedDog
Users that are interested in RedDog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- The tool for in silico serotyping☆66Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 7 months ago
- A set of scripts for calculating pairwise SNP distance☆45Feb 19, 2026Updated 5 months ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 6 years ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- ☆144Jul 9, 2026Updated last week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 5 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 4 months ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- BSR-Based Allele Calling Algorithm☆149Jul 8, 2026Updated last week
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- The MLST pipeline developed by the PathOGiST research group☆38Nov 29, 2023Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆38Updated this week
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 6 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆68Jul 8, 2016Updated 10 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13May 15, 2018Updated 8 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆55May 25, 2022Updated 4 years ago
- hybrid assembly pipeline for bacterial genomes☆648Jul 7, 2026Updated 2 weeks ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆41Oct 23, 2024Updated last year