bredelings / BAli-Phy
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
☆47Updated this week
Alternatives and similar repositories for BAli-Phy:
Users that are interested in BAli-Phy are comparing it to the libraries listed below
- ☆68Updated last year
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆13Updated 9 months ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆19Updated last year
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆23Updated 6 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Phylogenetic inference using Stan☆24Updated 3 weeks ago
- Software to call ROHs☆16Updated 3 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆54Updated 9 years ago
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- Method for dating admixture in ancient DNA specimens☆26Updated 3 years ago
- Visualize and perform a multitude of operations on newick files☆16Updated 3 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Updated 5 years ago
- Explore and analyze biological sequence data☆16Updated 7 months ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆13Updated 2 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆46Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Inference of population structure from time-series genotype data☆13Updated 5 years ago
- A Pedantic FASTA Parser and Tool Set☆14Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- mPTP - a tool for single-locus species delimitation☆27Updated last year
- babette is an R package to work with BEAST2☆45Updated last week
- A Better Sequencing Simulator for Metagenomics☆20Updated 4 years ago
- ☆41Updated 8 months ago
- gargammel is an ancient DNA simulator☆27Updated 8 months ago
- Maximum a posteriori estimate of contamination for ancient samples☆21Updated 4 months ago
- LoFreq Version 3☆27Updated 4 years ago
- ☆45Updated last month