bredelings / BAli-PhyLinks
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
☆47Updated last week
Alternatives and similar repositories for BAli-Phy
Users that are interested in BAli-Phy are comparing it to the libraries listed below
Sorting:
- ☆68Updated last year
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Automatically exported from code.google.com/p/macs☆16Updated 5 years ago
- ☆49Updated 4 months ago
- Explore and analyze biological sequence data☆16Updated last year
- software for UCE (and general) phylogenomics☆83Updated 6 months ago
- Phylogenetic inference using Stan☆23Updated 6 months ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆167Updated last month
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆45Updated 4 months ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆11Updated 9 months ago
- genotype dimensionality reduction with a VAE☆46Updated 6 months ago
- Inference of population structure from time-series genotype data☆15Updated 6 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Updated 5 years ago
- Phylogenetic, Distance and Other Calculations on VCF and Fasta Files☆21Updated last month
- De Bruijn graph representation in low memory☆35Updated last year
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 5 months ago
- A forward-time simulator for gene sequences modeling a variety of mutation and selection processes.☆20Updated 2 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆13Updated 2 years ago
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆14Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Software to call ROHs☆17Updated 5 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆23Updated 10 months ago
- initial commit☆26Updated 2 years ago
- Infer a tree sequence from genetic variation data.☆60Updated last week
- ☆18Updated 3 years ago
- Visualize and perform a multitude of operations on newick files☆16Updated 3 years ago