bredelings / BAli-PhyLinks
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
☆47Updated this week
Alternatives and similar repositories for BAli-Phy
Users that are interested in BAli-Phy are comparing it to the libraries listed below
Sorting:
- ☆68Updated last year
- A versatile simulation engine for stochastic population dynamics models.☆22Updated 2 years ago
- Explore and analyze biological sequence data☆16Updated last year
- Inference of population structure from time-series genotype data☆13Updated 6 years ago
- ☆49Updated 2 months ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆10Updated last month
- Software to call ROHs☆16Updated 3 months ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- ☆18Updated 3 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆43Updated 4 months ago
- ☆23Updated 4 years ago
- ABC random forests for model choice and parameter estimation, pure C++ implementation☆9Updated 10 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆56Updated 10 years ago
- genotype dimensionality reduction with a VAE☆46Updated 5 months ago
- software for UCE (and general) phylogenomics☆82Updated 4 months ago
- initial commit☆26Updated 2 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 6 months ago
- De Bruijn graph representation in low memory☆36Updated last year
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Visualize and perform a multitude of operations on newick files☆16Updated 3 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- This is a read-only mirror of the CRAN R package repository. PopGenome — An Efficient Swiss Army Knife for Population Genomic Analyses …☆16Updated 5 years ago
- Method for dating admixture in ancient DNA specimens☆27Updated 3 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Updated 7 years ago
- the hierfstat package☆25Updated 8 months ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- Phylogenetic inference using Stan☆23Updated 5 months ago