Alternatives and similar repositories for BAli-Phy

Users that are interested in BAli-Phy are comparing it to the libraries listed below

• revbayes / revbayes.archive
  ☆68Updated 2 years ago
• tyjo / dystruct
  Inference of population structure from time-series genotype data
  ☆15Updated 6 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆17Updated last year
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 6 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆53Updated last year
• xflouris / newick-tools
  Visualize and perform a multitude of operations on newick files
  ☆16Updated 3 years ago
• faircloth-lab / phyluce
  software for UCE (and general) phylogenomics
  ☆87Updated last month
• stschiff / sequenceTools
  ☆50Updated 2 months ago
• Pas-Kapli / mptp
  mPTP - a tool for single-locus species delimitation
  ☆30Updated 2 years ago
• COMBINE-lab / maximum-likelihood-relatedness-estimation
  ☆22Updated 4 years ago
• grenaud / schmutzi
  Maximum a posteriori estimate of contamination for ancient samples
  ☆23Updated 2 months ago
• tgvaughan / MASTER
  A versatile simulation engine for stochastic population dynamics models.
  ☆23Updated 3 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 3 years ago
• tothuhien / lsd2
  A phylogeny dating method using least-squares algorithms and criteria
  ☆32Updated last year
• jakob-schuster / matchbox
  A flexible processor for sequencing reads
  ☆22Updated 3 weeks ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆58Updated 10 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆70Updated last year
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 6 years ago
• stamatak / ExaML
  Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI
  ☆50Updated 5 years ago
• sej917 / BEAR
  A Better Sequencing Simulator for Metagenomics
  ☆20Updated 5 years ago
• jfy133 / Tidy_PopGen_PCA_Plotting
  A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.
  ☆13Updated 6 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 4 years ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆44Updated 2 months ago
• thednainus / Bayesian_tutorial
  Tutorial on Bayesian phylogenetic analysis
  ☆51Updated 8 years ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆84Updated last year
• Kingsford-Group / bloomtree
  ☆73Updated 6 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• gchen98 / macs
  Automatically exported from code.google.com/p/macs
  ☆17Updated 6 years ago