Bayesian co-estimation of phylogenies and multiple alignments via MCMC
☆50Aug 29, 2026Updated this week
Alternatives and similar repositories for BAli-Phy
Users that are interested in BAli-Phy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- Phylogenetic penalized likelihood☆58Jun 27, 2025Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Model of baysig language in Haskell (minus estimate)☆15Jun 23, 2016Updated 10 years ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆22Aug 14, 2026Updated 2 weeks ago
- R We There Yet?☆33Mar 27, 2025Updated last year
- Painless general-purpose sampling.☆24Nov 9, 2024Updated last year
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 8 months ago
- ☆23May 14, 2024Updated 2 years ago
- ☆11Dec 20, 2022Updated 3 years ago
- Python version of PHLAWD☆23Oct 28, 2024Updated last year
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- Developing efficient Bayesian phylogenetic inference methods☆12Dec 21, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- babette is an R package to work with BEAST2☆46Jul 16, 2026Updated last month
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆13Jul 11, 2026Updated last month
- Toy language to show the conversion of embedded higher-order abstract syntax (HOAS)☆21Apr 2, 2013Updated 13 years ago
- ☆12Feb 16, 2025Updated last year
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- ☆68Oct 17, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Validate FastQ Files☆36Oct 30, 2018Updated 7 years ago
- R package that provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).☆10Jan 29, 2024Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆199May 28, 2026Updated 3 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 5 months ago
- A collection of computational methods in science.☆12Jan 6, 2017Updated 9 years ago
- flexible pipelines for scalable secretome prediction, R package☆12Feb 21, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Postprocessing gadgets for output generated by RevBayes☆14Mar 20, 2026Updated 5 months ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 6 months ago
- PART: a fast algorithm for aggregating MCMC sub-chain samples☆10Sep 30, 2015Updated 10 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Aug 5, 2026Updated 3 weeks ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- Simulating Sequence Evolution☆10Jul 9, 2024Updated 2 years ago