mbhall88 / nohumanLinks
Remove human reads from a sequencing run
☆40Updated last week
Alternatives and similar repositories for nohuman
Users that are interested in nohuman are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆72Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Recombination-free trees☆60Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last week
- ☆45Updated last week
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆104Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- Read contamination removal☆25Updated last year
- Colinear block visualisation tool☆31Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 2 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago