mbhall88 / nohumanLinks
Remove human reads from a sequencing run
☆40Updated 2 months ago
Alternatives and similar repositories for nohuman
Users that are interested in nohuman are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated 2 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Recombination-free trees☆60Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated 2 weeks ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆99Updated 3 weeks ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Colinear block visualisation tool☆31Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- strain-level analysis tools☆39Updated 11 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆63Updated 3 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆17Updated last month
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago