Alternatives and similar repositories for Logan

Users that are interested in Logan are comparing it to the libraries listed below

• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆119Updated last week
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆140Updated 3 weeks ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆158Updated last month
• KatyBrown / CIAlign
  ☆133Updated last year
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆163Updated last year
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated last week
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆106Updated last year
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆146Updated 2 weeks ago
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆92Updated 4 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 6 months ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆119Updated 7 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆135Updated 5 months ago
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆128Updated last month
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆36Updated 3 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated last week
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆151Updated 2 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆75Updated 8 months ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆61Updated 9 months ago
• antismash / antismash
  antiSMASH
  ☆238Updated last month
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆214Updated 5 months ago
• EnzoAndree / HmmPy
  A Pure-Python parser of HMMER3 output
  ☆18Updated last year
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆132Updated 2 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 2 years ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆170Updated last year
• burstein-lab / genomic-nlp
  ☆27Updated last year
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆155Updated 8 months ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆127Updated 4 months ago