IndexThePlanet / LoganLinks
Logan Unitigs and Contigs
☆178Updated 2 months ago
Alternatives and similar repositories for Logan
Users that are interested in Logan are comparing it to the libraries listed below
Sorting:
- sensitive and precise assembly of short sequencing reads☆162Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆158Updated 3 weeks ago
- Phage Annotation using Protein Structures☆138Updated last week
- ☆133Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆117Updated last year
- Similarity networks of biosynthetic gene clusters☆145Updated this week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆90Updated 4 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆103Updated last year
- MGnify genome analysis pipeline☆109Updated last week
- Find clustered hits from a BLAST search☆126Updated 3 weeks ago
- Discovery of conserved gene clusters in multiple genomes☆118Updated 6 months ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- Systematic search of all known anti-phage systems.☆128Updated last month
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 2 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆172Updated 3 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- Bioinformatics tool for Locus Visualisation☆147Updated last month
- antiSMASH☆238Updated 3 weeks ago
- Webserver and command line tool for annotating engineered plasmids☆134Updated 4 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆213Updated 4 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 7 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Download files from NCBI Entrez by accession☆131Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆59Updated 8 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆126Updated 3 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- UniProt Id Mapping through API☆36Updated 2 months ago
- What should perfect bioinformatic tools be like?☆142Updated last month
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆195Updated this week
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago