steineggerlab / ufcgLinks
UFCG: Universal Fungal Core Genes
☆35Updated 6 months ago
Alternatives and similar repositories for ufcg
Users that are interested in ufcg are comparing it to the libraries listed below
Sorting:
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Discover and annotate the virome☆58Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- ☆34Updated 2 years ago
- ☆81Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated last week
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- Phyling: phylogenetic inference from annotated genomes☆30Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 2 weeks ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 2 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated 2 months ago
- Prophage Activity Estimator☆31Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆40Updated 2 months ago
- ☆34Updated 4 months ago