steineggerlab / ufcgLinks
UFCG: Universal Fungal Core Genes
☆34Updated last month
Alternatives and similar repositories for ufcg
Users that are interested in ufcg are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- Unified Human Gut Virome Catalog☆35Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated this week
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Discover and annotate the virome☆49Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆88Updated 3 months ago
- ☆34Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- ☆32Updated 6 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 5 months ago
- ☆75Updated this week
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆22Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- Bacterial GWAS analysis☆43Updated last month
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 8 months ago