Example datasets for CNVkit (http://github.com/etal/cnvkit)
☆23Aug 18, 2018Updated 7 years ago
Alternatives and similar repositories for cnvkit-examples
Users that are interested in cnvkit-examples are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Apr 20, 2023Updated 3 years ago
- HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data☆20Apr 25, 2017Updated 9 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆84Jun 30, 2025Updated last year
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 7 years ago
- ☆12Oct 19, 2021Updated 4 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆96Jun 29, 2026Updated last month
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- ☆11May 6, 2021Updated 5 years ago
- Web interface that allows users to perform computer-assisted text annotation☆14Jan 19, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆74Jun 26, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆19May 9, 2024Updated 2 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- DNA copy number detection from off-target sequence data☆34May 17, 2018Updated 8 years ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆18Jun 28, 2024Updated 2 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- ☆13Apr 25, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago