etal / cnvkit-examplesLinks
Example datasets for CNVkit (http://github.com/etal/cnvkit)
☆23Updated 7 years ago
Alternatives and similar repositories for cnvkit-examples
Users that are interested in cnvkit-examples are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- ☆26Updated last year
- ☆23Updated 5 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 3 weeks ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- ☆39Updated 4 years ago
- ☆23Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- GENome Organisation Visual Analytics☆15Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated last year
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆30Updated 8 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago