R package for RIVER (RNA-Informed Variant Effect on Regulation)
☆12Mar 5, 2020Updated 6 years ago
Alternatives and similar repositories for RIVER
Users that are interested in RIVER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 6 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- Just the leafviz parts of Leafcutter☆15Apr 2, 2026Updated 3 weeks ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated 11 months ago
- ☆22Mar 6, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆15Mar 15, 2023Updated 3 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- A rapido and lightweight method for PGS computation☆14Apr 20, 2026Updated last week
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated 2 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆15Sep 6, 2020Updated 5 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆48Dec 16, 2024Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 7 months ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- ☆15Jul 7, 2023Updated 2 years ago
- ☆15Apr 26, 2023Updated 3 years ago
- ☆37Feb 19, 2022Updated 4 years ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Updated this week
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Nov 25, 2024Updated last year
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 6 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆98Dec 12, 2022Updated 3 years ago
- Generic human DNA variant annotation pipeline☆60Feb 13, 2024Updated 2 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆98Feb 9, 2025Updated last year
- R package for fast & exact (restricted) likelihood ratio tests for mixed and additive models☆12Jan 7, 2026Updated 3 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 3 weeks ago
- ☆21Apr 20, 2026Updated last week
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆11Mar 20, 2026Updated last month
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated last week
- MetaXcan software and manuscript☆193Jul 4, 2025Updated 9 months ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 7 years ago