ipw012 / RIVERLinks
R package for RIVER (RNA-Informed Variant Effect on Regulation)
☆12Updated 5 years ago
Alternatives and similar repositories for RIVER
Users that are interested in RIVER are comparing it to the libraries listed below
Sorting:
- An interactive graphical illustration of genetic associations and their biological context☆17Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Tools for visualizing genomics data☆69Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆28Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- HOT regions paper☆11Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- DriverPower☆26Updated 8 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- ☆25Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 9 months ago
- Explore the cancer relevance of your gene list☆52Updated 3 weeks ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago