R package for RIVER (RNA-Informed Variant Effect on Regulation)
☆12Mar 5, 2020Updated 6 years ago
Alternatives and similar repositories for RIVER
Users that are interested in RIVER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆13Jun 11, 2019Updated 7 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 4 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- ☆31Nov 28, 2024Updated last year
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- GENetic Effect-Size distribution Inference from Summary-level data☆15Sep 6, 2020Updated 5 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆17Mar 15, 2023Updated 3 years ago
- A rapido and lightweight method for PGS computation☆14Aug 20, 2026Updated last week
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated 2 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Jul 30, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Dec 6, 2022Updated 3 years ago
- ☆13Jan 30, 2025Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆50Dec 16, 2024Updated last year
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 11 months ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- ☆15Jul 7, 2023Updated 3 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- A framework for network analysis and display of SNPs☆20Oct 31, 2016Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆15Apr 26, 2023Updated 3 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆11Jul 22, 2026Updated last month
- An R package for performing STAAR procedure in whole-genome sequencing studies☆104Jul 14, 2026Updated last month
- ☆37Feb 19, 2022Updated 4 years ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Updated this week
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆18Nov 25, 2024Updated last year
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- Generic human DNA variant annotation pipeline☆60Aug 11, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Long RNA-seq analysis workflow☆23Oct 13, 2025Updated 10 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 4 months ago
- R package for fast & exact (restricted) likelihood ratio tests for mixed and additive models☆12Jan 7, 2026Updated 7 months ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 8 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- MetaXcan software and manuscript☆202Jun 7, 2026Updated 2 months ago
- ☆21Apr 20, 2026Updated 4 months ago