Alternatives and similar repositories for geneSCF_inactive

Users that are interested in geneSCF_inactive are comparing it to the libraries listed below

• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• tengmx / rnaseqcomp
  Benchmarks for RNA-seq quantification pipelines
  ☆8Updated 5 years ago
• wtsi-npg / npg_seq_pipeline
  Processing and analysis of data coming from Illumina sequencing machines
  ☆10Updated this week
• pachterlab / kallisto-sleuth-workshop-2016
  materials and website for the 2016 kallisto sleuth workshop
  ☆11Updated 8 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆26Updated last month
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆27Updated 2 years ago
• wyguo / TSIS
  TSIS: an R package to infer time-series isoform switch of alternative splicing
  ☆3Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated 2 weeks ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆18Updated 5 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 11 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆43Updated 5 years ago
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆14Updated 4 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 9 months ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 11 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• vsbuffalo / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Updated 12 years ago
• lamortenera / epicseg
  Chromatin segmentation in R
  ☆19Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• drisso / RUVSeq
  Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…
  ☆14Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 9 months ago
• nasqar / ClusterProfShinyORA
  A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
  ☆13Updated 5 years ago
• NBISweden / workshop-mlbiostatistics
  ☆16Updated last month
• smshuai / DriverPower
  DriverPower
  ☆26Updated 3 months ago