hanchenphd / GMMAT
Generalized linear Mixed Model Association Tests
☆39Updated last year
Alternatives and similar repositories for GMMAT:
Users that are interested in GMMAT are comparing it to the libraries listed below
- Sequence kernel association test (SKAT)☆45Updated last month
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- Statistical tools for Quantitative Genetic Analyses☆36Updated this week
- FOCUS: Fine-mapping Of CaUsal gene Sets☆44Updated last year
- Manhattan++☆28Updated last year
- Colocalization analysis of genetic association signals☆51Updated 3 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆40Updated 2 weeks ago
- R package to perform Bayesian Genome-Wide Association Studies☆38Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆49Updated 6 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- software package for integrative genetic association analysis☆34Updated last year
- QTL Discovery using Annotations☆24Updated 2 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- Make LocusZoom-like plots with your own LD matrix.☆39Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆62Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- ☆20Updated 2 years ago
- Read PLINK BED/BIM/FAM files into R☆40Updated 3 years ago
- ☆40Updated 7 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- package for the causal TWAS project☆41Updated 3 weeks ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆19Updated 4 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆37Updated 3 months ago
- ☆30Updated 3 years ago
- Software for estimating correlation of trait effect sizes across populations☆44Updated 2 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆22Updated 4 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 3 weeks ago
- ☆34Updated 4 years ago