statgen / locuszoom-standalone
Create regional association plots from GWAS or meta-analysis
☆59Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for locuszoom-standalone
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 11 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- R package wrapping bedtools☆37Updated 2 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆48Updated 5 years ago
- Functional genomics and genome-wide association studies☆64Updated 6 years ago
- ☆42Updated last week
- R package for inferring copy number from read depth☆31Updated 2 years ago
- Sequence kernel association test (SKAT)☆42Updated 11 months ago
- Genomic Association Tester☆29Updated last year
- ☆24Updated 5 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆24Updated last month
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Summer school course materials collection☆25Updated 6 years ago
- ☆40Updated 6 years ago
- a set of NGS pipelines☆24Updated this week
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆48Updated 10 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 3 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆63Updated 5 months ago
- Read PLINK BED/BIM/FAM files into R☆39Updated 3 years ago
- Colocalization analysis of genetic association signals☆47Updated this week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 3 months ago
- An R interface to the MEME Suite☆45Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 3 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago