mhguo1 / TRAPDLinks
Burden testing against public controls
☆50Updated last year
Alternatives and similar repositories for TRAPD
Users that are interested in TRAPD are comparing it to the libraries listed below
Sorting:
- CN-Learn☆30Updated 5 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ☆21Updated last month
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- ☆54Updated 2 years ago
- ☆46Updated 5 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Tumor Mutational Burden☆63Updated 3 months ago
- ☆72Updated 2 years ago
- ☆16Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- CNV screening and annotation tool☆25Updated 9 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 weeks ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆23Updated last year
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago