mhguo1 / TRAPDLinks
Burden testing against public controls
☆50Updated last year
Alternatives and similar repositories for TRAPD
Users that are interested in TRAPD are comparing it to the libraries listed below
Sorting:
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- ☆54Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ☆21Updated last month
- QDNAseq package for Bioconductor☆53Updated last year
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- CNV screening and annotation tool☆25Updated 9 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- CN-Learn☆30Updated 5 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- ☆46Updated 6 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated last month
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 10 months ago
- Tumor Mutational Burden☆63Updated 4 months ago
- ☆23Updated last year
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Script to convert GTC/BPM files to VCF☆48Updated 2 months ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Data and information about the Polaris study☆54Updated 6 years ago