Alternatives and similar repositories for raremetal

Users that are interested in raremetal are comparing it to the libraries listed below

• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆105Updated 2 years ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆39Updated 4 years ago
• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆20Updated 4 years ago
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆14Updated 4 years ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆51Updated 2 years ago
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 4 years ago
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆147Updated last year
• ropensci / chlorpromazineR
  Calculate chlorpromazine-equivalent doses in R
  ☆12Updated 4 years ago
• niekverw / ukbpheno
  ☆31Updated 9 months ago
• andymckenzie / BRETIGEA
  Brain Cell Type Specific Gene Expression Analysis
  ☆15Updated last year
• precimed / simu
  Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies
  ☆12Updated last year
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆36Updated 7 months ago
• ikwak2 / aSPU
  An R package for adaptive sum of powered score test(ASPU) in genetic association studies.
  ☆12Updated 4 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• precimed / mostest
  Multivariate Omnibus Statistical Test
  ☆22Updated last year
• umich-cphds / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆27Updated last year
• privefl / paper-ldpred2
  Paper discribing LDpred2
  ☆16Updated 2 years ago
• limix / struct-lmm
  Structured Linear Mixed Model is a method to test for loci that interact with multiple environments.
  ☆14Updated 4 years ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆38Updated 6 years ago
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 4 years ago
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆25Updated 4 years ago
• tshmak / lassosum
  LASSO for GWAS with summary statistics
  ☆74Updated 4 years ago
• rmgpanw / ukbwranglr
  R package for UK Biobank data wrangling.
  ☆20Updated last year
• MRCIEU / epigraphdb
  Examples on using EpiGraphDB
  ☆27Updated 4 years ago
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• lsncibb / SummaryAUC
  Calculate AUC based on GWAS summary statistics only
  ☆10Updated 7 years ago
• PhilAppleby / ukbb-srmed
  Text matching UK Biobank Self-Reported medication descriptions for medication classification
  ☆26Updated 3 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• bogdanlab / h2-GRE
  Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…
  ☆14Updated 5 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆52Updated 3 years ago