wingolab-org / mpd-c
Multiplex Primer Design
☆20Updated 3 years ago
Related projects: ⓘ
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Multiplex Primer Design☆11Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 3 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Adapters for trimming☆30Updated 5 years ago
- ☆22Updated last month
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 8 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- fastx-utils using klib☆18Updated 4 years ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 2 years ago
- Computes various SV statistics☆14Updated 11 months ago
- Long read to rMATS☆28Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆17Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 2 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 4 years ago
- ☆51Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 6 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated last year
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆16Updated 3 years ago
- ☆13Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- Version II of Mandalorion☆32Updated 5 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 weeks ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- A new tool to infer sex from massively parallel sequencing data.☆14Updated 3 months ago